View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1314_low_15 (Length: 525)

Name: NF1314_low_15
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1314_low_15
NF1314_low_15
[»] chr7 (2 HSPs)
chr7 (31-513)||(33362678-33363149)
chr7 (43-75)||(16374048-16374080)
[»] chr3 (4 HSPs)
chr3 (32-75)||(8051261-8051304)
chr3 (31-75)||(4844497-4844541)
chr3 (31-75)||(4870193-4870237)
chr3 (33-61)||(43902362-43902390)
[»] chr5 (4 HSPs)
chr5 (31-75)||(35360072-35360116)
chr5 (31-75)||(14495791-14495835)
chr5 (43-75)||(18207257-18207289)
chr5 (43-75)||(38631076-38631108)
[»] chr8 (2 HSPs)
chr8 (31-75)||(968408-968452)
chr8 (31-75)||(29858035-29858079)
[»] chr6 (1 HSPs)
chr6 (43-75)||(22576117-22576149)
[»] chr4 (1 HSPs)
chr4 (31-75)||(38869814-38869858)
[»] chr2 (2 HSPs)
chr2 (31-75)||(7799021-7799065)
chr2 (31-75)||(14500323-14500367)
[»] chr1 (3 HSPs)
chr1 (31-75)||(1094571-1094615)
chr1 (31-71)||(12587316-12587356)
chr1 (31-75)||(51814540-51814584)


Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 31 - 513
Target Start/End: Original strand, 33362678 - 33363149
Alignment:
Q  31 gtgcttctcctcgaggtctcagattcgattccctccggtgccaatatattggatgccaatcaaatgacttacattgtgattaattcagcaaataataatg 130  Q
    ||||| ||||||||||| | || ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33362678 gtgctcctcctcgaggtttgaggttcaattccctccggtgccaatctattggatgccaatcaaatgacttacattgtgattaattcagcaaataataatg 33362777  T
Q  131 aatttaaaatctcaatttcatctagcnnnnnnnncaaggagatgggtgattatttgagccttatcatgttacccttaattttatgcctatagttaatggg 230  Q
    |||| |||||||||||||||                ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  33362778 aattcaaaatctcaatttca----------------aggagatgggtgattatttgagctttatcatgttacccttaattttatgcctatagttaatggg 33362861  T
Q  231 tgaaaagcatggcaatatattttgaactatgtgaagggttagaatcaaaatatcattaattagtacttaaacttaatttctttgnnnnnnnnnnnnnngg 330  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||    
T  33362862 tgaaaagcatgacaatatattttgaactatgtgaagggttagaatcaaaatatcattaattagtacttaaacttaatttctttgttttatctttttttgg 33362961  T
Q  331 ttataacttaatt----cctctttgttt-cagcagaagggtgatcaccaaaacgtccctaaatgaatataaatcttcatgatgttgttcatttcatgaaa 425  Q
    |||||||||||||    ||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33362962 ttataacttaattaattcctcttttttttcagcagaagggtgatcactaaaacgtccctaaatgaatataaatcttcatgatgttgttcatttcatgaaa 33363061  T
Q  426 atgatgagcttcatcattgatataaaagagagagcatgtgcactagctactaatctagggtttcttatattacaggtatcttgatatt 513  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33363062 acgatgagcttcatcattgatataaaagagagagcatgtgcactagctactaatctagggtttcttatattacaggtatcttgctatt 33363149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 16374048 - 16374080
Alignment:
Q  43 gaggtctcagattcgattccctccggtgccaat 75  Q
    ||||||||||||||||||||||| |||||||||    
T  16374048 gaggtctcagattcgattccctctggtgccaat 16374080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 8051261 - 8051304
Alignment:
Q  32 tgcttctcctcgaggtctcagattcgattccctccggtgccaat 75  Q
    ||||||||||||||||||||  ||||||||||||||||||||||    
T  8051261 tgcttctcctcgaggtctcaagttcgattccctccggtgccaat 8051304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 4844541 - 4844497
Alignment:
Q  31 gtgcttctcctcgaggtctcagattcgattccctccggtgccaat 75  Q
    ||||| ||||||||||||||||  ||||||| |||||||||||||    
T  4844541 gtgctcctcctcgaggtctcaggatcgattctctccggtgccaat 4844497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 4870237 - 4870193
Alignment:
Q  31 gtgcttctcctcgaggtctcagattcgattccctccggtgccaat 75  Q
    ||||| ||||||||||||||||  ||||||| |||||||||||||    
T  4870237 gtgctcctcctcgaggtctcaggatcgattctctccggtgccaat 4870193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 61
Target Start/End: Complemental strand, 43902390 - 43902362
Alignment:
Q  33 gcttctcctcgaggtctcagattcgattc 61  Q
    |||||||||||||||||||||||||||||    
T  43902390 gcttctcctcgaggtctcagattcgattc 43902362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 35360116 - 35360072
Alignment:
Q  31 gtgcttctcctcgaggtctcagattcgattccctccggtgccaat 75  Q
    |||||||||||||||||||||| |||||||| | |||||||||||    
T  35360116 gtgcttctcctcgaggtctcaggttcgattctcaccggtgccaat 35360072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 14495835 - 14495791
Alignment:
Q  31 gtgcttctcctcgaggtctcagattcgattccctccggtgccaat 75  Q
    ||||| ||||||||||||||||||| ||||| ||||| |||||||    
T  14495835 gtgctcctcctcgaggtctcagatttgattctctccgatgccaat 14495791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 18207257 - 18207289
Alignment:
Q  43 gaggtctcagattcgattccctccggtgccaat 75  Q
    |||||||||| ||||||||||||||||||||||    
T  18207257 gaggtctcaggttcgattccctccggtgccaat 18207289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 38631108 - 38631076
Alignment:
Q  43 gaggtctcagattcgattccctccggtgccaat 75  Q
    ||||||||||||||||||||||| |||||||||    
T  38631108 gaggtctcagattcgattccctctggtgccaat 38631076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 968408 - 968452
Alignment:
Q  31 gtgcttctcctcgaggtctcagattcgattccctccggtgccaat 75  Q
    ||||| |||||||||||||||| |||||||| ||||| |||||||    
T  968408 gtgctcctcctcgaggtctcaggttcgattctctccgatgccaat 968452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 29858079 - 29858035
Alignment:
Q  31 gtgcttctcctcgaggtctcagattcgattccctccggtgccaat 75  Q
    ||||| |||||||||||||||| ||||||||||  ||||||||||    
T  29858079 gtgctcctcctcgaggtctcaggttcgattcccctcggtgccaat 29858035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 22576117 - 22576149
Alignment:
Q  43 gaggtctcagattcgattccctccggtgccaat 75  Q
    ||||||||||||||||||||||| |||||||||    
T  22576117 gaggtctcagattcgattccctctggtgccaat 22576149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 38869814 - 38869858
Alignment:
Q  31 gtgcttctcctcgaggtctcagattcgattccctccggtgccaat 75  Q
    ||||| |||||| ||||||||| |||||||||||| |||||||||    
T  38869814 gtgctcctcctcaaggtctcaggttcgattccctctggtgccaat 38869858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 7799065 - 7799021
Alignment:
Q  31 gtgcttctcctcgaggtctcagattcgattccctccggtgccaat 75  Q
    ||||| ||||||||| ||||||||||||||| |||| ||||||||    
T  7799065 gtgctcctcctcgagatctcagattcgattctctccagtgccaat 7799021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 14500323 - 14500367
Alignment:
Q  31 gtgcttctcctcgaggtctcagattcgattccctccggtgccaat 75  Q
    ||||| |||||| |||||||||||||||||| ||| |||||||||    
T  14500323 gtgctcctcctctaggtctcagattcgattctctctggtgccaat 14500367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 1094571 - 1094615
Alignment:
Q  31 gtgcttctcctcgaggtctcagattcgattccctccggtgccaat 75  Q
    ||||| |||| |||||||||| ||||||||| |||||||||||||    
T  1094571 gtgctcctccacgaggtctcaaattcgattctctccggtgccaat 1094615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 12587316 - 12587356
Alignment:
Q  31 gtgcttctcctcgaggtctcagattcgattccctccggtgc 71  Q
    ||||| |||||||||||||||| |||||||| |||||||||    
T  12587316 gtgctcctcctcgaggtctcaggttcgattctctccggtgc 12587356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 51814540 - 51814584
Alignment:
Q  31 gtgcttctcctcgaggtctcagattcgattccctccggtgccaat 75  Q
    ||||| |||||| ||||||||| |||||||| |||||||||||||    
T  51814540 gtgctcctcctcaaggtctcaggttcgattctctccggtgccaat 51814584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University