View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_150 (Length: 251)
Name: NF1314_low_150
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_150 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 29023349 - 29023570
Alignment:
| Q |
1 |
tttatcatttgtttcactgagaagggtctgttaaattttagaaagttaacttattaaagagaaaatctttgaagacagcgcggataatatatctcagttt |
100 |
Q |
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| T |
29023349 |
tttatcatttgtttcaccgagaagggtctattaaattttagaaagttaacttactaaagagaaaatctttgaagacagcacggataatatatctcagttt |
29023448 |
T |
|
| Q |
101 |
atctcaccggttttcactttgcaggnnnnnnnagccgtatataagaggtaaaatatttcactaatttgatagaaaaatgtttctcagcaaactttatttt |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
29023449 |
atctcaccggttttcactttgcaggtttttttagccgtatataagaggtaaaatatttcactaatttgatagaaaaatgtttcacaacaaactttatttt |
29023548 |
T |
|
| Q |
201 |
ggatattcttgaatcaacacgt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
29023549 |
ggatattcttgaatcaacacgt |
29023570 |
T |
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