View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1314_low_152 (Length: 250)

Name: NF1314_low_152
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1314_low_152
NF1314_low_152
[»] chr3 (4 HSPs)
chr3 (88-197)||(19884705-19884814)
chr3 (88-201)||(26841051-26841164)
chr3 (47-75)||(19884668-19884696)
chr3 (43-75)||(26841010-26841042)
[»] chr1 (1 HSPs)
chr1 (88-194)||(43679720-43679827)
[»] chr6 (1 HSPs)
chr6 (88-197)||(30707465-30707574)
[»] chr4 (1 HSPs)
chr4 (88-197)||(32743535-32743644)
[»] chr7 (2 HSPs)
chr7 (88-197)||(10899477-10899586)
chr7 (1-47)||(2684375-2684421)


Alignment Details
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 88 - 197
Target Start/End: Original strand, 19884705 - 19884814
Alignment:
Q  88 ccacgttttttcaaaagctacaaaagttagcttctttgttttcannnnnnncttgccttgggaagcgatatttcatgccaccctgatttgaaaatcaaat 187  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||       |||||||||||||||| |||||||||||||| |||||||||| ||||||    
T  19884705 ccacgttttttgaaaagctacaaaagttagcttctttattttcacttttttcttgccttgggaagcgctatttcatgccaccgtgatttgaaactcaaat 19884804  T
Q  188 ctaaacaggc 197  Q
    | ||||||||    
T  19884805 ccaaacaggc 19884814  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 88 - 201
Target Start/End: Original strand, 26841051 - 26841164
Alignment:
Q  88 ccacgttttttcaaaagctacaaaagttagcttctttgttttcannnnnnncttgccttgggaagcgatatttcatgccaccctgatttgaaaatcaaat 187  Q
    |||||||||||||||||||| |||||||| ||||||| ||||||       |||||||||||||||| |||||||||||||| |||||||||| ||||||    
T  26841051 ccacgttttttcaaaagctataaaagttaacttctttattttcacttttttcttgccttgggaagcgctatttcatgccaccgtgatttgaaactcaaat 26841150  T
Q  188 ctaaacaggctaat 201  Q
    | ||||||||||||    
T  26841151 ccaaacaggctaat 26841164  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 75
Target Start/End: Original strand, 19884668 - 19884696
Alignment:
Q  47 atagcatgtttgctataccggtgaaaatg 75  Q
    |||||||||||||||||||||||||||||    
T  19884668 atagcatgtttgctataccggtgaaaatg 19884696  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 26841010 - 26841042
Alignment:
Q  43 atatatagcatgtttgctataccggtgaaaatg 75  Q
    |||| ||||||||||||||||||||||||||||    
T  26841010 atatctagcatgtttgctataccggtgaaaatg 26841042  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 43679720 - 43679827
Alignment:
Q  88 ccacgttttttcaaaagctacaaaagttagcttctttgtttt-cannnnnnncttgccttgggaagcgatatttcatgccaccctgatttgaaaatcaaa 186  Q
    |||||||| |||||||||||||||||||| |||||||||||| ||       ||||||||||||||||||||||||||||| | ||||||||||||| ||    
T  43679720 ccacgtttgttcaaaagctacaaaagttaacttctttgtttttcacttttttcttgccttgggaagcgatatttcatgccatcgtgatttgaaaatctaa 43679819  T
Q  187 tctaaaca 194  Q
    || |||||    
T  43679820 tccaaaca 43679827  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 197
Target Start/End: Original strand, 30707465 - 30707574
Alignment:
Q  88 ccacgttttttcaaaagctacaaaagttagcttctttgttttcannnnnnncttgccttgggaagcgatatttcatgccaccctgatttgaaaatcaaat 187  Q
    ||||||||||||| |||||| |||||||||||||||| ||||||       |||||||||||||||||||||| || | | | |||||| ||||||||||    
T  30707465 ccacgttttttcagaagctaaaaaagttagcttctttattttcacgtttgtcttgccttgggaagcgatatttgatcctaacgtgatttcaaaatcaaat 30707564  T
Q  188 ctaaacaggc 197  Q
    | ||||||||    
T  30707565 ccaaacaggc 30707574  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 88 - 197
Target Start/End: Original strand, 32743535 - 32743644
Alignment:
Q  88 ccacgttttttcaaaagctacaaaagttagcttctttgttttcannnnnnncttgccttgggaagcgatatttcatgccaccctgatttgaaaatcaaat 187  Q
    ||||||||||||| |||||| |||||||||||||||| ||||||       ||||||||||||||| |||||| || | | | |||||| ||||||||||    
T  32743535 ccacgttttttcagaagctaaaaaagttagcttctttattttcacgtttgtcttgccttgggaagctatatttgatcctaacgtgattttaaaatcaaat 32743634  T
Q  188 ctaaacaggc 197  Q
    | ||||||||    
T  32743635 ccaaacaggc 32743644  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 197
Target Start/End: Complemental strand, 10899586 - 10899477
Alignment:
Q  88 ccacgttttttcaaaagctacaaaagttagcttctttgttttcannnnnnncttgccttgggaagcgatatttcatgccaccctgatttgaaaatcaaat 187  Q
    ||||||||||||| |||||| |||||||||||||||| ||||||       |||||||||||||||||||||| || | |   |||||| ||||| ||||    
T  10899586 ccacgttttttcagaagctaaaaaagttagcttctttattttcacgtttgtcttgccttgggaagcgatatttgatcctaatgtgatttcaaaattaaat 10899487  T
Q  188 ctaaacaggc 197  Q
    | ||||||||    
T  10899486 ccaaacaggc 10899477  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 2684421 - 2684375
Alignment:
Q  1 agaataaaatgtaaactgtgttggaaggttaaagatgtacccatata 47  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||    
T  2684421 agaataaaatttaaactgtgttggaaagttaaagatgtacccatata 2684375  T

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