View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_153 (Length: 250)
Name: NF1314_low_153
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_153 |
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Alignment Details
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 30790726 - 30790683
Alignment:
| Q |
22 |
tgacgtttgatcatcactattcaatgtattctataggtggtgtg |
65 |
Q |
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| T |
30790726 |
tgacgtttcatcatcactattcaatgtattctataggtggtgtg |
30790683 |
T |
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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 144
Target Start/End: Original strand, 30736544 - 30736572
Alignment:
| Q |
116 |
cctccaaaattacgagagaagaagacaat |
144 |
Q |
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| T |
30736544 |
cctccaaaattacgagagaagaagacaat |
30736572 |
T |
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