View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_155 (Length: 250)
Name: NF1314_low_155
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_155 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 29 - 250
Target Start/End: Original strand, 6286084 - 6286305
Alignment:
| Q |
29 |
ttcgtaacatgagagaacatggttgaaattacacataagatagtcttaaaatgcatgtagtatttcaatgaacatgtaaaatcaaactttggtaaatcac |
128 |
Q |
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| T |
6286084 |
ttcgtaacatgagagtacatggttgaaattacacataagatagtcttagaatgtaagtagtatttccacgaacatgtaaaatcaaactttggtaaatcac |
6286183 |
T |
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| Q |
129 |
aaaattcattatcgattccaacttaggccatttaaaagaaaatatgttattagcctgacacatttttcattatgtgtcagggatagtggtatggaagctt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6286184 |
aaaattcattatcgattccaacttaggccatttaaaagaaaatatgttattagcctgacacatttttcattatgtgtcagggatagtggtatggaagctt |
6286283 |
T |
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| Q |
229 |
tgattgttcgtctctcaattcc |
250 |
Q |
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|||||||||||||||||||||| |
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| T |
6286284 |
tgattgttcgtctctcaattcc |
6286305 |
T |
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