View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_161 (Length: 246)
Name: NF1314_low_161
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_161 |
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| [»] chr6 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 82 - 246
Target Start/End: Complemental strand, 23116804 - 23116640
Alignment:
| Q |
82 |
aattctataaggaccatagaaacgaggacttaacttctcattaattcgcttagctaaagatttgagtctgtacggctgaagtttgagataaacacaatca |
181 |
Q |
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| T |
23116804 |
aattttataaggaccatagaaacgaggacttaacttctcattaattcgcttagccaaagatttgagtctgtatggctgaagtttgagataaacccaatca |
23116705 |
T |
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| Q |
182 |
ccaacaacgtaggaaacctcacgtctgtgtttatttgcttgggtgcgcatctgatcttgagcttt |
246 |
Q |
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| T |
23116704 |
tcaacaacgtaggaaacctcacgcctgtgtttatttgcttgggtgcgcatctgatcttgagcttt |
23116640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 23116931 - 23116855
Alignment:
| Q |
12 |
gcggtaaaggctgaggattgacagttggaattatagctttcttcaacaaagatacatggaaaacaggatgaattcta |
88 |
Q |
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| T |
23116931 |
gcggtaagggctgaggattgacagttggaattatagctttcttcaacaaagatacatggaaaacaggatgaattcta |
23116855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 82 - 246
Target Start/End: Complemental strand, 25064025 - 25063861
Alignment:
| Q |
82 |
aattctataaggaccatagaaacgaggacttaacttctcattaattcgcttagctaaagatttgagtctgtacggctgaagtttgagataaacacaatca |
181 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
25064025 |
aattttataaggaccatagaaacgaggacttaacttctcattaattcgcttagccaaagatttgagtctgtatggctgaagtttgagataaacccaatca |
25063926 |
T |
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| Q |
182 |
ccaacaacgtaggaaacctcacgtctgtgtttatttgcttgggtgcgcatctgatcttgagcttt |
246 |
Q |
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| T |
25063925 |
acaacaacgtaggaaacctcacgcctgtgtttatttgcttgggtgcgcatctgatcttgagcttt |
25063861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 25064152 - 25064076
Alignment:
| Q |
12 |
gcggtaaaggctgaggattgacagttggaattatagctttcttcaacaaagatacatggaaaacaggatgaattcta |
88 |
Q |
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| T |
25064152 |
gcggtaagggctgaggattgacagttggaattatagctttcttcaacaaagatacatggaaaacaggatgaattcta |
25064076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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