View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_172 (Length: 213)
Name: NF1314_low_172
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_172 |
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Alignment Details
Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 5550019 - 5549887
Alignment:
| Q |
1 |
ccaaacatgacctagataattatactgaaaacttaggaaatgaagataaaagatgattaacttactaagtgcttgagtcactctccttttgtctggtgtt |
100 |
Q |
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| T |
5550019 |
ccaaacatgacctagataattatactgaaaacttaggaaatgaagataaaagatgattaacttactaagtgcttgagtcactctccttttgtctggtgtt |
5549920 |
T |
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| Q |
101 |
gtaaatttagtaggtgtcacaggttctgctcgt |
133 |
Q |
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| T |
5549919 |
gtaaatttagtaggtgtcccagtttttgctcgt |
5549887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 5540772 - 5540892
Alignment:
| Q |
1 |
ccaaacatgacctagataattatactgaaaacttaggaaatgaagataaaagatgattaacttactaagtgcttgagtcactctccttttgtctggtgtt |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5540772 |
ccaaacatgacctagaaaattatactgaaaacttaggaaatgaacataagagatgattaacttactaagtgcttgagtcactctacttttgtctggtgtt |
5540871 |
T |
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| Q |
101 |
gtaaatttagtaggtgtcaca |
121 |
Q |
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| T |
5540872 |
atgaatctagtaggtttcaca |
5540892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 5007408 - 5007368
Alignment:
| Q |
57 |
ttaacttactaagtgcttgagtcactctccttttgtctggt |
97 |
Q |
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| T |
5007408 |
ttaacttactgagtgcttgagtcactctccttttgtctggt |
5007368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 24485077 - 24485017
Alignment:
| Q |
30 |
aacttaggaaatgaagat--aaaagatgattaacttactaagtgcttgagtcactctcctt |
88 |
Q |
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|||||||||||||||||| |||| |||||||| |||| ||||| |||||| ||||||||| |
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| T |
24485077 |
aacttaggaaatgaagataaaaaacatgattaatttacaaagtgtttgagttactctcctt |
24485017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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