View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_181 (Length: 206)
Name: NF1314_low_181
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_181 |
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Alignment Details
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 9060127 - 9060258
Alignment:
| Q |
1 |
tccaacaatctctcttcttgttatataaacaccaacatggtgtctaacaaccctaactcaaacacaaca-------------accttagcatctcctagc |
87 |
Q |
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| T |
9060127 |
tccaacaatctctcttcttgttatataaacaccaacatggtgtctaacaaccctaactcaaacacaacaaacttacacaactaccttagcatctcctagc |
9060226 |
T |
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| Q |
88 |
taattacattatcttcaagacactaccttttc |
119 |
Q |
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| T |
9060227 |
taattccattatcttcaagacactatcttttc |
9060258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 9077108 - 9077204
Alignment:
| Q |
1 |
tccaacaatctctcttcttgttatataaacaccaacatggtgtctaacaaccctaactc-aaacacaacaacc----ttagcatctcctagctaatt |
92 |
Q |
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| T |
9077108 |
tccaacaatctctcttcttgttatataaacaccaacatggtctctaacaaccctaactcaaaacacaactaccttagttagcatctcctagctaatt |
9077204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 9063418 - 9063471
Alignment:
| Q |
16 |
tcttgttatataaacaccaacatggtgtctaacaaccctaactcaaacacaacaa |
70 |
Q |
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| T |
9063418 |
tcttgttatataaacaccaac-tggtctctaacaaccatagctcaaacccaacaa |
9063471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 9072548 - 9072588
Alignment:
| Q |
62 |
acacaacaaccttagcatctcctagctaattacattatctt |
102 |
Q |
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| T |
9072548 |
acacaactaacttagcatctcctagctaattccattatctt |
9072588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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