View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1314_low_22 (Length: 485)

Name: NF1314_low_22
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1314_low_22
NF1314_low_22
[»] chr3 (14 HSPs)
chr3 (30-470)||(21730591-21731032)
chr3 (334-466)||(37054387-37054521)
chr3 (377-466)||(7976585-7976675)
chr3 (338-466)||(47767429-47767559)
chr3 (382-466)||(47284148-47284233)
chr3 (337-466)||(53470374-53470505)
chr3 (378-463)||(38506824-38506910)
chr3 (378-466)||(2104772-2104861)
chr3 (338-403)||(46429492-46429558)
chr3 (337-466)||(30767100-30767232)
chr3 (389-466)||(31021728-31021807)
chr3 (341-466)||(53129788-53129915)
chr3 (390-466)||(6837004-6837081)
chr3 (339-466)||(31189342-31189471)
[»] chr1 (21 HSPs)
chr1 (341-466)||(31166310-31166437)
chr1 (378-466)||(48953607-48953695)
chr1 (378-463)||(44571239-44571325)
chr1 (341-466)||(8224768-8224895)
chr1 (341-466)||(39887127-39887254)
chr1 (381-466)||(50471791-50471877)
chr1 (378-466)||(41822489-41822578)
chr1 (378-466)||(52135571-52135660)
chr1 (343-466)||(28632532-28632656)
chr1 (377-466)||(6470632-6470722)
chr1 (381-466)||(35491198-35491284)
chr1 (378-466)||(41822643-41822733)
chr1 (378-466)||(42230758-42230848)
chr1 (382-466)||(13181630-13181715)
chr1 (378-466)||(37447305-37447394)
chr1 (378-466)||(41823106-41823195)
chr1 (378-466)||(49216284-49216373)
chr1 (380-466)||(946415-946501)
chr1 (408-466)||(47820282-47820340)
chr1 (378-465)||(32128068-32128156)
chr1 (437-473)||(37448341-37448377)
[»] chr2 (16 HSPs)
chr2 (372-466)||(11036374-11036469)
chr2 (378-466)||(41585636-41585725)
chr2 (378-466)||(8736387-8736476)
chr2 (377-466)||(7167613-7167703)
chr2 (377-466)||(30698318-30698408)
chr2 (380-466)||(39630265-39630351)
chr2 (378-466)||(21504488-21504577)
chr2 (378-466)||(32840138-32840227)
chr2 (339-466)||(45094417-45094546)
chr2 (375-466)||(44255669-44255761)
chr2 (372-466)||(740736-740831)
chr2 (337-466)||(1583755-1583886)
chr2 (341-466)||(17905654-17905780)
chr2 (382-466)||(1730095-1730179)
chr2 (409-466)||(14306753-14306810)
chr2 (378-466)||(20935744-20935833)
[»] chr5 (17 HSPs)
chr5 (378-466)||(17542304-17542393)
chr5 (338-466)||(22303813-22303943)
chr5 (377-466)||(32250041-32250131)
chr5 (339-462)||(22766950-22767075)
chr5 (378-466)||(33146211-33146300)
chr5 (367-450)||(11601066-11601150)
chr5 (377-466)||(35111263-35111353)
chr5 (367-432)||(8255054-8255119)
chr5 (378-466)||(15270797-15270886)
chr5 (425-466)||(28489549-28489590)
chr5 (378-466)||(37241053-37241142)
chr5 (384-466)||(31316205-31316288)
chr5 (389-466)||(10314698-10314776)
chr5 (377-466)||(14834861-14834951)
chr5 (339-466)||(35379342-35379469)
chr5 (377-466)||(22302558-22302649)
chr5 (379-462)||(28490031-28490115)
[»] scaffold0318 (1 HSPs)
scaffold0318 (337-466)||(2863-2993)
[»] chr7 (20 HSPs)
chr7 (378-463)||(14790151-14790237)
chr7 (378-466)||(32650611-32650700)
chr7 (341-462)||(25189162-25189285)
chr7 (377-466)||(3905591-3905681)
chr7 (377-466)||(30524292-30524382)
chr7 (378-466)||(13814926-13815015)
chr7 (337-466)||(28539100-28539231)
chr7 (369-466)||(15990920-15991018)
chr7 (338-466)||(23455179-23455309)
chr7 (389-466)||(40495279-40495357)
chr7 (378-466)||(40495755-40495844)
chr7 (378-466)||(40667379-40667468)
chr7 (378-466)||(45984378-45984467)
chr7 (378-466)||(45988738-45988827)
chr7 (408-463)||(41443035-41443090)
chr7 (377-466)||(22391520-22391609)
chr7 (377-466)||(36328728-36328820)
chr7 (377-462)||(43791127-43791213)
chr7 (378-462)||(26415991-26416076)
chr7 (339-403)||(29065915-29065980)
[»] chr4 (18 HSPs)
chr4 (378-466)||(53760736-53760825)
chr4 (378-465)||(4490070-4490153)
chr4 (377-466)||(29091174-29091264)
chr4 (369-466)||(41139502-41139600)
chr4 (378-466)||(40338198-40338287)
chr4 (378-466)||(56339171-56339260)
chr4 (371-466)||(19461682-19461778)
chr4 (421-466)||(17727010-17727055)
chr4 (378-466)||(42775643-42775732)
chr4 (378-462)||(46243047-46243130)
chr4 (338-466)||(2125854-2125984)
chr4 (338-426)||(15660255-15660345)
chr4 (420-466)||(24705432-24705478)
chr4 (377-466)||(26534530-26534620)
chr4 (377-466)||(46242490-46242580)
chr4 (378-462)||(17727103-17727188)
chr4 (390-466)||(27284608-27284685)
chr4 (378-466)||(52294991-52295080)
[»] scaffold0169 (1 HSPs)
scaffold0169 (377-466)||(4112-4202)
[»] chr8 (15 HSPs)
chr8 (339-466)||(24044958-24045087)
chr8 (335-466)||(33985998-33986131)
chr8 (378-466)||(34008819-34008908)
chr8 (371-466)||(31976538-31976634)
chr8 (337-465)||(28324619-28324749)
chr8 (369-466)||(35404698-35404796)
chr8 (378-466)||(26520395-26520484)
chr8 (393-466)||(34388561-34388634)
chr8 (377-466)||(8049291-8049381)
chr8 (420-466)||(24510233-24510279)
chr8 (383-466)||(6416227-6416311)
chr8 (367-466)||(9982663-9982763)
chr8 (337-466)||(29257307-29257438)
chr8 (378-454)||(29611408-29611485)
chr8 (339-466)||(44889352-44889481)
[»] chr6 (5 HSPs)
chr6 (379-466)||(31412940-31413028)
chr6 (408-466)||(15616307-15616365)
chr6 (341-466)||(28918165-28918292)
chr6 (408-466)||(1368546-1368604)
chr6 (379-466)||(9697501-9697589)
[»] scaffold0400 (1 HSPs)
scaffold0400 (342-466)||(4444-4570)
[»] scaffold0365 (1 HSPs)
scaffold0365 (342-466)||(5088-5214)
[»] scaffold0129 (1 HSPs)
scaffold0129 (377-469)||(19235-19327)
[»] scaffold0047 (1 HSPs)
scaffold0047 (389-466)||(50253-50331)


Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 30 - 470
Target Start/End: Original strand, 21730591 - 21731032
Alignment:
Q  30 ctagctagctaatctaggttattaacaaagctataatgtta-tttatatataatggagttttattagactttagggttttgttgcaagttgcaatattat 128  Q
    ||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21730591 ctagctacctaatctaggttattaacaa-gctataatgttaatttatatataatggagttttattagactttagggttttgttgcaagttgcaatattat 21730689  T
Q  129 tttacattgcttcacttggttttaggtgtgttacttgtaatatttttatacttagcttcacttggttttaggtgtgtcatgtgaatttactcgataggtc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21730690 tttacattgcttcacttggttttaggtgtgttacttgtaatatttttatacttagcttcacttggttttaggtgtgtcatgtgaatttactcgataggtc 21730789  T
Q  229 acgagataggtttacacaatgagatgttgaccacaataaaacaaactttaaactggcatggttgctaataaacaaaaattgttccactgactttgccaaa 328  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  21730790 acgagataggtttatacaatgagatgttgaccacaataaaacaaactttaaactggcatgtttgctaataaacaaaaattgttccactgactttgccaaa 21730889  T
Q  329 tgcatgaatcttagagtgtgtttggacgagggaatgt-ctaaggtaatttaatgttttgaaggaattcaaatatttgaaatgaattttattctttgaata 427  Q
    ||||||||||| |||||||||||||| |||||||||| ||||||| || ||||||||||||||||||||||||||||| |||||||| ||| ||||||||    
T  21730890 tgcatgaatctaagagtgtgtttggatgagggaatgtcctaaggttatgtaatgttttgaaggaattcaaatatttgagatgaatttcattgtttgaata 21730989  T
Q  428 ataatacaaagaatttttaaaatgatggaaatttatgaactat 470  Q
    |||||  ||| ||||||||||||||||||||||||||||||||    
T  21730990 ataatttaaacaatttttaaaatgatggaaatttatgaactat 21731032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 334 - 466
Target Start/End: Original strand, 37054387 - 37054521
Alignment:
Q  334 gaatcttagagtgtgtttggacgagggaatgtct-aaggtaatttaatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataa 431  Q
    ||||||||||||||||||||| | |||||||| | |||| ||| ||||||||||||||||||||||||  ||||  ||||||| ||| ||||  |||||     
T  37054387 gaatcttagagtgtgtttggatgggggaatgttttaagggaatgtaatgttttgaaggaattcaaataccttgaggtgaatttcattgtttgggtaatag 37054486  T
Q  432 tacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |   ||||||||| |||||||||||||||||||||    
T  37054487 tttgaagaattttcaaaatgatggaaatttatgaa 37054521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 7976585 - 7976675
Alignment:
Q  377 taatgttttgaaggaattcaaatat-ttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||||||||||||| |||||  ||||  |||||| |||| |||| ||||||||  ||||||||||||||||||||||||||||||||    
T  7976585 taatgttttgaaggaatttaaatacattgaggtgaattctattgtttggataataatttaaagaatttttaaaatgatggaaatttatgaa 7976675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 466
Target Start/End: Original strand, 47767429 - 47767559
Alignment:
Q  338 cttagagtgtgtttggacgagggaatgtcta-aggtaatttaatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataataca 435  Q
    ||||||||||||||||| | |||||||| |  ||| ||| ||||||||||||||||||||||||  ||||  ||||||  ||| |||| |||||| |       
T  47767429 cttagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaaggaattcaaataccttgaggtgaattacattgtttggataatagtttg 47767528  T
Q  436 aagaatttttaaaatgatggaaatttatgaa 466  Q
    ||||||||| |||||||||||||||||||||    
T  47767529 aagaattttcaaaatgatggaaatttatgaa 47767559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 382 - 466
Target Start/End: Complemental strand, 47284233 - 47284148
Alignment:
Q  382 ttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||| |||||||||||| ||||| |||||||  ||| |||||||||||||   ||||||||| |||||||||||||||||||||    
T  47284233 ttttgagggaattcaaatactttgatatgaattccattgtttgaataataatttgaagaattttcaaaatgatggaaatttatgaa 47284148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 466
Target Start/End: Complemental strand, 53470505 - 53470374
Alignment:
Q  337 tcttagagtgtgtttggacgagggaatgtcta-aggtaatttaatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatac 434  Q
    |||||||||||||||||| |||| ||||| |  ||| ||| || |||||||| |||||||||||| ||||   ||||||| ||| |||| ||||||||      
T  53470505 tcttagagtgtgtttggatgaggaaatgttttgagggaatctattgttttgagggaattcaaatactttggggtgaatttcattgtttggataataattt 53470406  T
Q  435 aaagaatttttaaaatgatggaaatttatgaa 466  Q
     ||| ||||| |||||||||||||||||||||    
T  53470405 gaagcattttcaaaatgatggaaatttatgaa 53470374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 378 - 463
Target Start/End: Complemental strand, 38506910 - 38506824
Alignment:
Q  378 aatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttat 463  Q
    |||||||||| |||||||||||| |||||  ||||||  ||| |||||||||||||   ||||||||| ||||||||||||||||||    
T  38506910 aatgttttgagggaattcaaataatttgaggtgaattccattgtttgaataataatttgaagaattttcaaaatgatggaaatttat 38506824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 466
Target Start/End: Original strand, 2104772 - 2104861
Alignment:
Q  378 aatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    ||||||| || |||||||||||| |||||  |||||| |||| |||| ||||||||   ||||||||| |||||||||||||||||||||    
T  2104772 aatgtttcgagggaattcaaatactttgatgtgaattctattgtttggataataatttgaagaattttcaaaatgatggaaatttatgaa 2104861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 403
Target Start/End: Complemental strand, 46429558 - 46429492
Alignment:
Q  338 cttagagtgtgtttggacgagggaatgtcta-aggtaatttaatgttttgaaggaattcaaatattt 403  Q
    ||||||||||||||||| |||||||| | |  ||||||| ||||||||||||||||||||| |||||    
T  46429558 cttagagtgtgtttggatgagggaatattttgaggtaatgtaatgttttgaaggaattcaattattt 46429492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 337 - 466
Target Start/End: Original strand, 30767100 - 30767232
Alignment:
Q  337 tcttagagtgtgtttggacgagggaatgtcta-aggtaatttaatgttttgaaggaattcaaatatttgaaa--tgaattttattctttgaataataata 433  Q
    ||||||||||| |||||| | || ||||| |  ||| ||| ||||||| |||||||||||||||| || |||  ||||||  ||| ||||  |||||||     
T  30767100 tcttagagtgtatttggatggggtaatgttttgagggaatctaatgttatgaaggaattcaaatacttaaaaggtgaattccattgtttgggtaataatt 30767199  T
Q  434 caaagaatttttaaaatgatggaaatttatgaa 466  Q
      ||||||||| |||||||||||||||||||||    
T  30767200 tgaagaattttcaaaatgatggaaatttatgaa 30767232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 466
Target Start/End: Original strand, 31021728 - 31021807
Alignment:
Q  389 ggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaattttt-aaaatgatggaaatttatgaa 466  Q
    |||||||||||| |||||  |||||| |||| |||| ||||||||   |||||||||| |||||||||||||||||||||    
T  31021728 ggaattcaaatactttgatgtgaattctattgtttgcataataatttgaagaatttttcaaaatgatggaaatttatgaa 31021807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 466
Target Start/End: Complemental strand, 53129915 - 53129788
Alignment:
Q  341 agagtgtgtttggacgagggaatgtct-aaggtaatttaatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaag 438  Q
    |||||||||||||| |||||||||| |  ||| ||| ||||||||| | |||||||||||| ||||   ||||||  ||| |||| ||||||||   |||    
T  53129915 agagtgtgtttggatgagggaatgtttcgagggaatgtaatgttttaagggaattcaaatactttggggtgaattccattgtttggataataatttgaag 53129816  T
Q  439 aatttttaaaatgatggaaatttatgaa 466  Q
     ||||| ||||||||| |||||||||||    
T  53129815 tattttcaaaatgatgaaaatttatgaa 53129788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 466
Target Start/End: Complemental strand, 6837081 - 6837004
Alignment:
Q  390 gaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    ||||||||||| |||||  |||| || ||| |||||||||||||   ||||||||| |||||||| ||||||||||||    
T  6837081 gaattcaaatagtttgagttgaaattcattgtttgaataataatttgaagaattttcaaaatgatagaaatttatgaa 6837004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 466
Target Start/End: Complemental strand, 31189471 - 31189342
Alignment:
Q  339 ttagagtgtgtttggacgagggaatgtcta-aggtaatttaatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaa 436  Q
    |||||||||||||| | ||| |||||| |  ||||||| |||||||||||  ||||||||||| |||||  | ||||||||  ||||  | |||||  ||    
T  31189471 ttagagtgtgtttgaatgagagaatgttttgaggtaatgtaatgttttgagagaattcaaatactttgaggtaaattttatcgtttgggtgataatttaa 31189372  T
Q  437 agaatttttaaaatgatggaaatttatgaa 466  Q
    | ||||||||| |||||||||| |||||||    
T  31189371 ataatttttaagatgatggaaacttatgaa 31189342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 341 - 466
Target Start/End: Original strand, 31166310 - 31166437
Alignment:
Q  341 agagtgtgtttggacgagggaatgtcta-aggtaatttaatgttttgaaggaattcaaatattt-gaaatgaattttattctttgaataataatacaaag 438  Q
    |||||||||||||| |||||||||| |  || |||| ||||||||||| ||||| ||||||||| || ||||||| |||| |||||||||||||   |||    
T  31166310 agagtgtgtttggatgagggaatgttttgagataatgtaatgttttgatggaatgcaaatattttgagatgaattctattgtttgaataataatttgaag 31166409  T
Q  439 aatttttaaaatgatggaaatttatgaa 466  Q
    |||||| |||||||||||||||||||||    
T  31166410 aattttcaaaatgatggaaatttatgaa 31166437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 378 - 466
Target Start/End: Original strand, 48953607 - 48953695
Alignment:
Q  378 aatgttttgaaggaattcaaatatttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    ||||||||||||||||||||||||||||  |||||| |||| |||| ||||||||   ||||||||| ||||||||||| |||||||||    
T  48953607 aatgttttgaaggaattcaaatatttgaggtgaattctattgtttggataataatttgaagaattttcaaaatgatggatatttatgaa 48953695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 378 - 463
Target Start/End: Original strand, 44571239 - 44571325
Alignment:
Q  378 aatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttat 463  Q
    |||||||||| |||||||||||| |||||| ||||||  ||| |||| ||||||||  |||||||||||||||||||||||||||||    
T  44571239 aatgttttgagggaattcaaatactttgaagtgaattccattgtttggataataatttaaagaatttttaaaatgatggaaatttat 44571325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 341 - 466
Target Start/End: Original strand, 8224768 - 8224895
Alignment:
Q  341 agagtgtgtttggacgagggaatgtcta-aggtaatttaatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaag 438  Q
    |||||||||||||| |||||||||| |  ||| ||| ||||||||||| |||||| ||||| |||||  ||||||  ||| |||| || |||||  ||||    
T  8224768 agagtgtgtttggatgagggaatgttttgagggaatgtaatgttttgagggaattgaaatactttgatgtgaattccattgtttggatgataatttaaag 8224867  T
Q  439 aatttttaaaatgatggaaatttatgaa 466  Q
    |||||| |||||||||||||||||||||    
T  8224868 aattttcaaaatgatggaaatttatgaa 8224895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 341 - 466
Target Start/End: Original strand, 39887127 - 39887254
Alignment:
Q  341 agagtgtgtttggacgagggaatgtct-aaggtaatttaatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaag 438  Q
    ||||||||||| || |||||||||| | |||| ||| | ||||||||||| |||||||||| |||||  ||||||  ||| |||| ||||||||   |||    
T  39887127 agagtgtgtttagatgagggaatgttttaagggaatatgatgttttgaagaaattcaaatactttgatgtgaattccattgtttggataataatttgaag 39887226  T
Q  439 aatttttaaaatgatggaaatttatgaa 466  Q
    |||||| |||||||||||||||||||||    
T  39887227 aattttcaaaatgatggaaatttatgaa 39887254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 381 - 466
Target Start/End: Original strand, 50471791 - 50471877
Alignment:
Q  381 gttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    ||||||| |||||||||||| ||| |  ||||||||||| |||| ||||||||  |||||||||| |||||||||||||||| ||||    
T  50471791 gttttgagggaattcaaatactttcaggtgaattttattgtttggataataatttaaagaattttcaaaatgatggaaatttttgaa 50471877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 466
Target Start/End: Complemental strand, 41822578 - 41822489
Alignment:
Q  378 aatgttttgaaggaattcaaatatttgaa-atgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||||| |||||||||||| || || |||||||  ||| |||| ||||||||   ||||||||| |||||||||||||||||||||    
T  41822578 aatgttttgagggaattcaaatactttaagatgaattccattgtttggataataatttgaagaattttcaaaatgatggaaatttatgaa 41822489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 466
Target Start/End: Complemental strand, 52135660 - 52135571
Alignment:
Q  378 aatgttttgaaggaattcaaatatttgaaa-tgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||||| |||||||||||||||  |  | ||||||||| |||| || |||||   |||||||||||||||||||||||||||||||    
T  52135660 aatgttttgagggaattcaaatatttttaggtaaattttattgtttggatgataatttgaagaatttttaaaatgatggaaatttatgaa 52135571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 466
Target Start/End: Complemental strand, 28632656 - 28632532
Alignment:
Q  343 agtgtgtttggacgagggaatgtcta-aggtaatttaatgttttgaaggaattcaaatatttgaaatgaattttattctttgaataataatacaaagaat 441  Q
    |||||||||||| |||||||||| |  ||| ||| |||||||||||  ||||||||   |||||  ||||||  ||| |||| ||||||||  |||||||    
T  28632656 agtgtgtttggatgagggaatgtttggagggaatgtaatgttttgagagaattcaatactttgaggtgaattccattgtttggataataatttaaagaat 28632557  T
Q  442 ttttaaaatgatggaaatttatgaa 466  Q
    ||| ||||||||| |||||||||||    
T  28632556 tttcaaaatgatgaaaatttatgaa 28632532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 466
Target Start/End: Complemental strand, 6470722 - 6470632
Alignment:
Q  377 taatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    ||||||||||| |||||||||||  |||||  || |||  ||| |||||||||||||   ||||||||| |||||||||||||||||||||    
T  6470722 taatgttttgagggaattcaaattctttgaggtggattccattgtttgaataataatttgaagaattttcaaaatgatggaaatttatgaa 6470632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 466
Target Start/End: Original strand, 35491198 - 35491284
Alignment:
Q  381 gttttgaaggaattcaaatattt-gaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||  ||||| |||||||| || |||||||| ||| |||| ||||||||   ||||||||| |||||||||||||||||||||    
T  35491198 gttttgagagaatttaaatattttgatatgaatttcattgtttggataataatttgaagaattttcaaaatgatggaaatttatgaa 35491284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 466
Target Start/End: Complemental strand, 41822733 - 41822643
Alignment:
Q  378 aatgttttgaaggaatt-caaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||||| |||||| |||||| ||||| |||||||  ||| |||| ||||||||   ||||||||| |||||||||||||||||||||    
T  41822733 aatgttttgagggaatttcaaatactttgagatgaattccattgtttggataataatttgaagaattttcaaaatgatggaaatttatgaa 41822643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 466
Target Start/End: Original strand, 42230758 - 42230848
Alignment:
Q  378 aatgttttgaaggaattcaaatattt-gaaatgaattttattctttgaataataataca-aagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||||| | |||| |||||||| ||| ||||||| ||| |||| ||||||||    |||||||||||||||||||||||||||||||    
T  42230758 aatgttttgaggtaatttaaatattttgaagtgaatttcattgtttggataataattttgaagaatttttaaaatgatggaaatttatgaa 42230848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 382 - 466
Target Start/End: Original strand, 13181630 - 13181715
Alignment:
Q  382 ttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||| |||||||||||| ||||| || |||| |||| |||| ||||||||   |||||| || |||||||||||||||||||||    
T  13181630 ttttgagggaattcaaatactttgagattaattatattttttggataataatttgaagaatattcaaaatgatggaaatttatgaa 13181715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 378 - 466
Target Start/End: Complemental strand, 37447394 - 37447305
Alignment:
Q  378 aatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    ||||||||||  ||||||||||| |||||  ||||||  ||| |||| ||||||||   ||||||||| |||||||||||||||||||||    
T  37447394 aatgttttgagagaattcaaatactttgatgtgaattccattgtttggataataatttgaagaattttcaaaatgatggaaatttatgaa 37447305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 378 - 466
Target Start/End: Complemental strand, 41823195 - 41823106
Alignment:
Q  378 aatgttttgaaggaattcaaatat-ttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||||||||||||||||||  |||| |||||||  ||| |||| |||||| |   ||||||||| ||||| |||||||||||||||    
T  41823195 aatgttttgaaggaattcaaataccttgagatgaattccattgtttggataatagtttgaagaattttcaaaataatggaaatttatgaa 41823106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 378 - 466
Target Start/End: Complemental strand, 49216373 - 49216284
Alignment:
Q  378 aatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    ||||||| || |||||||||||| |||||  | ||||| ||| || | ||||||||  |||||||||| |||||||||||||||||||||    
T  49216373 aatgtttcgagggaattcaaatactttgaggtaaatttcattgttgggataataatttaaagaattttcaaaatgatggaaatttatgaa 49216284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 466
Target Start/End: Original strand, 946415 - 946501
Alignment:
Q  380 tgttttgaaggaattcaaatatttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||| |||||| ||||| ||   ||||||| |||| |||| ||||||||   ||| ||||| |||||||||||||||||||||    
T  946415 tgttttgagggaatttaaatactttggatgaattctattgtttggataataatttgaagcattttcaaaatgatggaaatttatgaa 946501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 408 - 466
Target Start/End: Original strand, 47820282 - 47820340
Alignment:
Q  408 tgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    ||||||| ||| |||| ||||||||   ||| |||||||||||||||||||||||||||    
T  47820282 tgaatttcattgtttggataataatttgaagcatttttaaaatgatggaaatttatgaa 47820340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 465
Target Start/End: Original strand, 32128068 - 32128156
Alignment:
Q  378 aatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatga 465  Q
    |||||||||| |||||||||||| ||||   ||||||  ||| ||| |||||||||   ||||||||| |||||||||| |||||||||    
T  32128068 aatgttttgagggaattcaaatactttgtggtgaattccattgttttaataataatttgaagaattttcaaaatgatgggaatttatga 32128156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 437 - 473
Target Start/End: Complemental strand, 37448377 - 37448341
Alignment:
Q  437 agaatttttaaaatgatggaaatttatgaactatatt 473  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  37448377 agaattttcaaaatgatggaaatttatgaagtatatt 37448341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 372 - 466
Target Start/End: Original strand, 11036374 - 11036469
Alignment:
Q  372 taatttaatgttttgaaggaattcaaatat-ttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||| ||||||||| ||||||||||||||  |||| |||||||||||| || ||||||||||   |||||||||||||||||||||||||||||||    
T  11036374 taatgtaatgttttaaaggaattcaaatacattgagatgaattttattattagaataataatttgaagaatttttaaaatgatggaaatttatgaa 11036469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 378 - 466
Target Start/End: Complemental strand, 41585725 - 41585636
Alignment:
Q  378 aatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||||| |||||||||||| |||||| |||| |||||| |||| ||||||||   |||||||||||||||||||||||||||||||    
T  41585725 aatgttttgagggaattcaaatactttgaagtgaaatttattgtttggataataatttgaagaatttttaaaatgatggaaatttatgaa 41585636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 466
Target Start/End: Complemental strand, 8736476 - 8736387
Alignment:
Q  378 aatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||||| |||||||||||| |||||  ||||||  ||| |||| ||||||||  |||||||||| |||||||||||||||||||||    
T  8736476 aatgttttgagggaattcaaatactttgaggtgaattccattgtttggataataatttaaagaattttcaaaatgatggaaatttatgaa 8736387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 377 - 466
Target Start/End: Complemental strand, 7167703 - 7167613
Alignment:
Q  377 taatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||||||||||||||||||| |||||  ||||||| ||| ||||  ||||| |   ||||||||| |||||||||||||||||||||    
T  7167703 taatgttttgaaggaattcaaatactttgaggtgaatttcattgtttgggtaatagtttgaagaattttcaaaatgatggaaatttatgaa 7167613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 30698318 - 30698408
Alignment:
Q  377 taatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    ||||||||||||||||||||||||  ||||  ||||||| ||| |||| |||||| |   ||||||||| |||||||||||||||| ||||    
T  30698318 taatgttttgaaggaattcaaataccttgaggtgaatttcattgtttggataatagtttgaagaattttcaaaatgatggaaatttgtgaa 30698408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 466
Target Start/End: Original strand, 39630265 - 39630351
Alignment:
Q  380 tgttttgaaggaattcaaatatttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||| |||||||||||||||||   ||||| |||| |||| ||||||||   ||  ||||| |||||||||||||||||||||    
T  39630265 tgttttgagggaattcaaatatttgaggggaattctattgtttggataataatttgaactattttcaaaatgatggaaatttatgaa 39630351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 378 - 466
Target Start/End: Original strand, 21504488 - 21504577
Alignment:
Q  378 aatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||||| |||||||||||| ||||| |||||||  ||| |||||||||||||   ||||||||| ||||||| |  ||||||||||    
T  21504488 aatgttttgagggaattcaaatattttgagatgaattccattgtttgaataataatttgaagaattttcaaaatgaagttaatttatgaa 21504577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 378 - 466
Target Start/End: Complemental strand, 32840227 - 32840138
Alignment:
Q  378 aatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||||| |||||| ||||| |||||  ||||||| ||| |||| ||||||||   ||||||||| ||||||||||||||| |||||    
T  32840227 aatgttttgagggaatttaaatactttgaggtgaatttcattgtttggataataatttgaagaattttcaaaatgatggaaattcatgaa 32840138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 339 - 466
Target Start/End: Complemental strand, 45094546 - 45094417
Alignment:
Q  339 ttagagtgtgtttggacgagggaatgtcta-aggtaatttaatgttttgaaggaattcaaatatttgaaa-tgaattttattctttgaataataatacaa 436  Q
    |||||||||||||| | |||||||||| |  ||| ||| ||||||||||| |||||| || || || ||| ||||||  ||| |||| |||| |||   |    
T  45094546 ttagagtgtgtttgaatgagggaatgttttgagggaatataatgttttgagggaatttaactactttaaagtgaattccattgtttggataagaatttga 45094447  T
Q  437 agaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||| |||||||||||||||||||||    
T  45094446 agaattttcaaaatgatggaaatttatgaa 45094417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 466
Target Start/End: Original strand, 44255669 - 44255761
Alignment:
Q  375 tttaatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||| ||||||||  ||||||||||| ||||   |||||| |||| |||| ||||||||   ||||||||| |||||||||||||||||||||    
T  44255669 tttattgttttgagagaattcaaatactttggggtgaattctattgtttggataataatttgaagaattttcaaaatgatggaaatttatgaa 44255761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 466
Target Start/End: Original strand, 740736 - 740831
Alignment:
Q  372 taatttaatgttttgaaggaattcaaat-atttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||| ||||||||||   ||||||| || ||||||  ||||||||||| ||||||| |||||   ||||||||| ||||| |||||||||||||||    
T  740736 taatgtaatgttttgtgagaattcatatcatttgaggtgaattttattgtttgaatgataatttgaagaattttcaaaataatggaaatttatgaa 740831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 466
Target Start/End: Complemental strand, 1583886 - 1583755
Alignment:
Q  337 tcttagagtgtgtttggacgagggaatgtcta-aggtaatttaatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatac 434  Q
    |||||||||||||||||| | |||||||| |  ||| ||| || |||||| | |||||||||||| ||||   ||||||  ||| |||| ||||||||      
T  1583886 tcttagagtgtgtttggatgggggaatgttttgagggaatgtattgttttaagggaattcaaatactttggggtgaattccattgtttggataataattt 1583787  T
Q  435 aaagaatttttaaaatgatggaaatttatgaa 466  Q
     ||| ||||| |||||||||||||||||||||    
T  1583786 gaagtattttcaaaatgatggaaatttatgaa 1583755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 466
Target Start/End: Original strand, 17905654 - 17905780
Alignment:
Q  341 agagtgtgtttggacgagggaatgtcta-aggtaatttaatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaag 438  Q
    |||||||||| ||| |||||||||| |  ||  ||| ||||||||| |||||||||||||| |||||  ||||||  ||| |||| ||||||||   |||    
T  17905654 agagtgtgttaggatgagggaatgttttgagagaatgtaatgttttaaaggaattcaaatattttgaggtgaattccatt-tttggataataatttgaag 17905752  T
Q  439 aatttttaaaatgatggaaatttatgaa 466  Q
     ||||| |||||||||||||||||||||    
T  17905753 gattttcaaaatgatggaaatttatgaa 17905780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 466
Target Start/End: Original strand, 1730095 - 1730179
Alignment:
Q  382 ttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||| |||||| ||||| ||||| |||||||| ||| |||| ||||||||   ||||||||| |||||||||| ||||||||||    
T  1730095 ttttgagggaatttaaatactttgagatgaatttcattgtttggataataatttgaagaattttcaaaatgatgg-aatttatgaa 1730179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 466
Target Start/End: Complemental strand, 14306810 - 14306753
Alignment:
Q  409 gaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||| ||| |||| ||||||||  ||| |||||||||||||||| |||||||||||    
T  14306810 gaatttcattgtttggataataatttaaataatttttaaaatgatgaaaatttatgaa 14306753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 466
Target Start/End: Original strand, 20935744 - 20935833
Alignment:
Q  378 aatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||||| |||||||||||| |||||  ||||||  ||| |||| || |||||   ||||||||| |||||||| ||||||||||||    
T  20935744 aatgttttgagggaattcaaatactttgatgtgaattccattgtttggatgataatttgaagaattttcaaaatgattgaaatttatgaa 20935833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 378 - 466
Target Start/End: Complemental strand, 17542393 - 17542304
Alignment:
Q  378 aatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||||| |||||||||||| |||||  ||||||  ||| |||||||||||||  ||||||||||||||||||||||||||||||||    
T  17542393 aatgttttgagggaattcaaatactttgaggtgaattccattgtttgaataataatttaaagaatttttaaaatgatggaaatttatgaa 17542304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 466
Target Start/End: Complemental strand, 22303943 - 22303813
Alignment:
Q  338 cttagagtgtgtttggacgagggaatgtcta-aggtaatttaatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataataca 435  Q
    ||||||||||||||||| | |||||||| |  ||| ||| ||||||||||||||||||||||||  ||||  ||||||| ||| ||||  ||||| |       
T  22303943 cttagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaaggaattcaaataccttgaggtgaatttcattgtttgggtaatagtttg 22303844  T
Q  436 aagaatttttaaaatgatggaaatttatgaa 466  Q
    ||||||||| |||||||||||||||||||||    
T  22303843 aagaattttcaaaatgatggaaatttatgaa 22303813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 377 - 466
Target Start/End: Complemental strand, 32250131 - 32250041
Alignment:
Q  377 taatgttttgaaggaattcaaatat-ttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    ||||||||||| ||||||||||||  |||| |||||||  ||| |||| ||||||||  ||||||||||||||||||||| ||||||||||    
T  32250131 taatgttttgagggaattcaaataccttgagatgaattccattgtttggataataatttaaagaatttttaaaatgatggtaatttatgaa 32250041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 462
Target Start/End: Original strand, 22766950 - 22767075
Alignment:
Q  339 ttagagtgtgtttggacgagggaatgtcta-aggtaatttaatgttttgaaggaattcaaatatttgaaa-tgaattttattctttgaataataatacaa 436  Q
    |||||||||||||||| | |||||||| |  ||| ||| ||||||||||| |||||||||||| || ||  |||||| |||| |||| ||||||||  ||    
T  22766950 ttagagtgtgtttggatgggggaatgttttgagggaatataatgttttgagggaattcaaatactttaaggtgaattctattgtttggataataatttaa 22767049  T
Q  437 agaatttttaaaatgatggaaattta 462  Q
    |||||||| | |||||||||||||||    
T  22767050 agaattttcagaatgatggaaattta 22767075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 466
Target Start/End: Original strand, 33146211 - 33146300
Alignment:
Q  378 aatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||||| |||||||||||| |||||  ||||||  ||| |||| ||||||||  |||||||||| |||||||||||||||||||||    
T  33146211 aatgttttgagggaattcaaatactttgaggtgaattccattgtttggataataatttaaagaattttcaaaatgatggaaatttatgaa 33146300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 367 - 450
Target Start/End: Original strand, 11601066 - 11601150
Alignment:
Q  367 taaggtaatttaatgttttgaaggaattcaaat-atttgaaatgaattttattctttgaataataatacaaagaatttttaaaat 450  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||||||||| |||| || |||||   ||||||||| |||||    
T  11601066 taaggtaatataatgttttgaaggaattcaaataatttgaggtgaattttattatttggatgataatttgaagaattttcaaaat 11601150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 35111263 - 35111353
Alignment:
Q  377 taatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||||||||||||||||||| |||||  ||| || |||| |||| ||||||||   ||||| ||| ||||||||| |||||||||||    
T  35111263 taatgttttgaaggaattcaaatattttgatgtgagttctattgtttggataataatttgaagaactttcaaaatgatgaaaatttatgaa 35111353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 367 - 432
Target Start/End: Original strand, 8255054 - 8255119
Alignment:
Q  367 taaggtaatttaatgttttgaaggaattcaaatatttgaaatgaattttattctttgaataataat 432  Q
    ||||||||| ||||||||||| ||||||||||||||| |  ||||||| ||| |||| ||||||||    
T  8255054 taaggtaatgtaatgttttgagggaattcaaatattttaggtgaatttcattgtttggataataat 8255119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 378 - 466
Target Start/End: Complemental strand, 15270886 - 15270797
Alignment:
Q  378 aatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||||| |||||||||||| |||||  ||||||  ||| |||||||||||||    ||||| || |||||||||||||||||||||    
T  15270886 aatgttttgagggaattcaaatactttgaggtgaattccattgtttgaataataatttgtagaatattcaaaatgatggaaatttatgaa 15270797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 425 - 466
Target Start/End: Original strand, 28489549 - 28489590
Alignment:
Q  425 ataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    ||||||||  ||||||||||||||||||||||||||||||||    
T  28489549 ataataatttaaagaatttttaaaatgatggaaatttatgaa 28489590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 378 - 466
Target Start/End: Complemental strand, 37241142 - 37241053
Alignment:
Q  378 aatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||| | |||||| ||||| |||||  ||||||  ||| |||| ||||||||   |||||||||||||||||||||||||||||||    
T  37241142 aatgttttcagggaattgaaatactttgaggtgaattccattgtttggataataatttgaagaatttttaaaatgatggaaatttatgaa 37241053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 466
Target Start/End: Original strand, 31316205 - 31316288
Alignment:
Q  384 ttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||| |||||||||| | ||||| ||||||| |||| |||| || |||||   |||||||||| ||||||||||||||||||||    
T  31316205 ttgagggaattcaaacactttgagatgaattctattatttggatgataatttgaagaattttttaaatgatggaaatttatgaa 31316288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 466
Target Start/End: Original strand, 10314698 - 10314776
Alignment:
Q  389 ggaattcaaatattt-gaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    ||||||||||||||| ||  |||||| |||| |||| ||||||||   ||||||||| ||||||||| |||||||||||    
T  10314698 ggaattcaaatattttgatgtgaattctattgtttggataataatttgaagaattttcaaaatgatgaaaatttatgaa 10314776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 14834861 - 14834951
Alignment:
Q  377 taatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    ||||||||| | ||||| |||||| |||||  ||||||| ||| |||| ||||||||   ||||||||| ||||||||| |||||||||||    
T  14834861 taatgttttaagggaatccaaatactttgaggtgaatttcattgtttggataataatttgaagaattttcaaaatgatgaaaatttatgaa 14834951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 466
Target Start/End: Original strand, 35379342 - 35379469
Alignment:
Q  339 ttagagtgtgtttggacgagggaatgtcta-aggtaatttaatgttttgaaggaattcaaa-tatttgaaatgaattttattctttgaataataatacaa 436  Q
    |||||||||||||||| | |||||||| |  || |||| ||||||||||| |||||||||| | |||||| |||||||||||  ||| || |||||   |    
T  35379342 ttagagtgtgtttggatg-gggaatgttttgagataatgtaatgttttgagggaattcaaattctttgaagtgaattttattgattggatgataatttga 35379440  T
Q  437 agaatttttaaaatgatggaaatttatgaa 466  Q
    || ||||| |||||| ||||||||||||||    
T  35379441 ag-attttcaaaatggtggaaatttatgaa 35379469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 22302558 - 22302649
Alignment:
Q  377 taatgttttgaaggaattcaaatatttgaaatg--aattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    ||||||||||| |||||||||||| || ||| |  ||||  ||| |||| ||||||||   |||| |||| |||||||||||||||||||||    
T  22302558 taatgttttgagggaattcaaatacttaaaaggcgaattccattgtttggataataatttgaagatttttcaaaatgatggaaatttatgaa 22302649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 462
Target Start/End: Original strand, 28490031 - 28490115
Alignment:
Q  379 atgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaattta 462  Q
    ||||||||| |||||||||||| |||||  ||||||  ||| |||| ||||||||   | ||||||| |||||||||||||||||    
T  28490031 atgttttgagggaattcaaatactttgaggtgaattccattgtttggataataatttgaggaattttcaaaatgatggaaattta 28490115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 466
Target Start/End: Original strand, 2863 - 2993
Alignment:
Q  337 tcttagagtgtgtttggacgagggaatgtcta-aggtaatttaatgttttgaaggaattcaaatatttgaaatgaattttattctttgaataataataca 435  Q
    ||||||||||||||| || | |||||||| |  ||  ||| ||||||||||| |||||||||||||||||  ||||||  ||| |||| ||||||||       
T  2863 tcttagagtgtgtttagatgggggaatgtttcgagagaatgtaatgttttgagggaattcaaatatttgaggtgaattccattgtttggataataatttg 2962  T
Q  436 aagaatttttaaaatgatggaaatttatgaa 466  Q
    ||||||||| |||||||||||||||||||||    
T  2963 aagaattttcaaaatgatggaaatttatgaa 2993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 378 - 463
Target Start/End: Original strand, 14790151 - 14790237
Alignment:
Q  378 aatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttat 463  Q
    |||||||||| |||||||||||| |||||  ||||||||||| |||| ||||||||  |||||||||||||||||||| ||||||||    
T  14790151 aatgttttgagggaattcaaatactttgaggtgaattttattatttggataataatttaaagaatttttaaaatgatgaaaatttat 14790237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 378 - 466
Target Start/End: Original strand, 32650611 - 32650700
Alignment:
Q  378 aatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||||| |||||||||||| |||||  ||||||||||| |||| ||||||||   ||||||||| |||||||||||||||||||||    
T  32650611 aatgttttgagggaattcaaatactttgaggtgaattttattgtttggataataatttgaagaattttcaaaatgatggaaatttatgaa 32650700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 341 - 462
Target Start/End: Complemental strand, 25189285 - 25189162
Alignment:
Q  341 agagtgtgtttggacgagggaatgtcta-aggtaatttaatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaag 438  Q
    |||||||||||||| | |||||||| |  |||||||  |||||||||| |||||||||||| |||||| ||||||| ||| |||| || |||||   |||    
T  25189285 agagtgtgtttggatgtgggaatgttttgaggtaatgcaatgttttgagggaattcaaatactttgaagtgaatttcattgtttggatgataatttgaag 25189186  T
Q  439 aatttttaaaatgatggaaattta 462  Q
    |||||| |||||||||||||||||    
T  25189185 aattttcaaaatgatggaaattta 25189162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 377 - 466
Target Start/End: Complemental strand, 3905681 - 3905591
Alignment:
Q  377 taatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    ||||||||| |||||||||||||| |||||  |||||| |||| |||| ||||||||   ||||||||| ||||||||| |||||||||||    
T  3905681 taatgttttcaaggaattcaaatactttgaggtgaattctattgtttggataataatttgaagaattttcaaaatgatgaaaatttatgaa 3905591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 30524292 - 30524382
Alignment:
Q  377 taatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    ||||||||||| |||||||||||| ||||  |||||||| ||| |||| ||||||||   ||  |||||||||||||||||||||||||||    
T  30524292 taatgttttgagggaattcaaatactttgggatgaatttcattgtttggataataatttgaaatatttttaaaatgatggaaatttatgaa 30524382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 466
Target Start/End: Complemental strand, 13815015 - 13814926
Alignment:
Q  378 aatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||||| |||||||||||| |||||  ||||||  ||| |||| ||||||||   ||||||||| |||||||||||||||||||||    
T  13815015 aatgttttgagggaattcaaatactttgatgtgaattccattatttggataataatttgaagaattttcaaaatgatggaaatttatgaa 13814926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 466
Target Start/End: Complemental strand, 28539231 - 28539100
Alignment:
Q  337 tcttagagtgtgtttggacgagggaatgtcta-aggtaatttaatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatac 434  Q
    |||||||||||||||||| | |||||||| |  ||| ||| || |||||||| |||||||||||| ||||   ||||||  ||| |||| ||||||||      
T  28539231 tcttagagtgtgtttggatgggggaatgttttgagggaatgtattgttttgagggaattcaaatactttggggtgaattccattgtttggataataattt 28539132  T
Q  435 aaagaatttttaaaatgatggaaatttatgaa 466  Q
     ||| ||||| |||||||||||||||||||||    
T  28539131 gaagcattttcaaaatgatggaaatttatgaa 28539100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 466
Target Start/End: Original strand, 15990920 - 15991018
Alignment:
Q  369 aggtaatttaatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    ||||||| |||||| ||||||||||||||||| ||||| || ||||  ||| |||| || |||||  | || ||||| |||||||||||||||||||||    
T  15990920 aggtaatgtaatgtcttgaaggaattcaaatactttgagataaattgcattgtttggatgataatttagagtattttcaaaatgatggaaatttatgaa 15991018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 466
Target Start/End: Complemental strand, 23455309 - 23455179
Alignment:
Q  338 cttagagtgtgtttggacgagggaatgtcta-aggtaatttaatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataataca 435  Q
    |||||| |||||||||| |||||||||| |  ||| ||| || |||||||| |||||||||||| ||||   ||||||  ||| |||| ||||||||       
T  23455309 cttagaatgtgtttggatgagggaatgttttgagggaatgtattgttttgagggaattcaaatactttggggtgaattccattgtttggataataatttg 23455210  T
Q  436 aagaatttttaaaatgatggaaatttatgaa 466  Q
    ||| ||||| |||||||||||||||||||||    
T  23455209 aagcattttcaaaatgatggaaatttatgaa 23455179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 466
Target Start/End: Original strand, 40495279 - 40495357
Alignment:
Q  389 ggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||||||| |||||  |||||| |||| |||| ||||||||   ||||||||| |||||||||||||||||||||    
T  40495279 ggaattcaaatactttgatgtgaattctattgtttggataataatttgaagaattttcaaaatgatggaaatttatgaa 40495357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 378 - 466
Target Start/End: Original strand, 40495755 - 40495844
Alignment:
Q  378 aatgttttgaaggaattcaaatattt-gaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||||| ||||||||||||||| |   ||||||  ||| |||| ||||||||   ||| |||||||||||||||||||||||||||    
T  40495755 aatgttttgagggaattcaaatattttggggtgaattccattgtttggataataatttgaagcatttttaaaatgatggaaatttatgaa 40495844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 378 - 466
Target Start/End: Original strand, 40667379 - 40667468
Alignment:
Q  378 aatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||||| |||||| ||||| ||||  |||||||| ||| |||| ||||||||   ||| ||||| |||||||||||||||||||||    
T  40667379 aatgttttgagggaatttaaatactttgggatgaatttcattgtttggataataatttgaagcattttcaaaatgatggaaatttatgaa 40667468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 378 - 466
Target Start/End: Original strand, 45984378 - 45984467
Alignment:
Q  378 aatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||| | |||||||||||| |||||  ||||||  ||| |||| ||||||||   ||||||||| |||||||||||||||||||||    
T  45984378 aatgttttaagggaattcaaatactttgaggtgaattcaattgtttggataataatttgaagaattttcaaaatgatggaaatttatgaa 45984467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 378 - 466
Target Start/End: Original strand, 45988738 - 45988827
Alignment:
Q  378 aatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||| | |||||||||||| |||||  ||||||  ||| |||| ||||||||   ||||||||| |||||||||||||||||||||    
T  45988738 aatgttttaagggaattcaaatactttgaggtgaattcaattgtttggataataatttgaagaattttcaaaatgatggaaatttatgaa 45988827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 463
Target Start/End: Complemental strand, 41443090 - 41443035
Alignment:
Q  408 tgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttat 463  Q
    |||||| ||||||||| ||||||||   ||||||||| ||||||||||||||||||    
T  41443090 tgaattatattctttggataataatttgaagaattttcaaaatgatggaaatttat 41443035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 466
Target Start/End: Complemental strand, 22391609 - 22391520
Alignment:
Q  377 taatgttttgaaggaattcaaatattt-gaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||||||  ||||| |||||||| ||  ||||||| ||| |||| ||||||||  |||||||||| |||||||||||||||| ||||    
T  22391609 taatgttttgagagaatttaaatattttgaggtgaatttcattgtttggataataatttaaagaatttt-aaaatgatggaaatttctgaa 22391520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 466
Target Start/End: Complemental strand, 36328820 - 36328728
Alignment:
Q  377 taatgttttgaaggaattcaaatatttgaaa---tgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||||||  ||||||||||| || |||   |||||| |||| |||| ||||||||   ||||||||| |||||||||| ||||||||||    
T  36328820 taatgttttgagagaattcaaatacttaaaaaggtgaattctattatttggataataatttgaagaattttcaaaatgatggtaatttatgaa 36328728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 462
Target Start/End: Original strand, 43791127 - 43791213
Alignment:
Q  377 taatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaattta 462  Q
    ||||||||||| |||||||||||| |||||  |||| |  ||| |||| ||||||||   ||||||||| |||||||||||||||||    
T  43791127 taatgttttgagggaattcaaatactttgaggtgaactccattgtttggataataatttgaagaattttcaaaatgatggaaattta 43791213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 462
Target Start/End: Original strand, 26415991 - 26416076
Alignment:
Q  378 aatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaattta 462  Q
    |||||||| || ||||||||||| |||||  ||||||| ||  |||| ||||||||   ||||||||| |||||||||||||||||    
T  26415991 aatgttttaaaagaattcaaatactttgaggtgaatttcatggtttggataataatttgaagaattttcaaaatgatggaaattta 26416076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 403
Target Start/End: Complemental strand, 29065980 - 29065915
Alignment:
Q  339 ttagagtgtgtttggacgagggaatgtct-aaggtaatttaatgttttgaaggaattcaaatattt 403  Q
    |||||||||||||||| |  ||||||| | |||||||| ||||||||||| ||||||||| |||||    
T  29065980 ttagagtgtgtttggatggaggaatgttttaaggtaatgtaatgttttgagggaattcaattattt 29065915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 378 - 466
Target Start/End: Complemental strand, 53760825 - 53760736
Alignment:
Q  378 aatgttttgaaggaattcaaatattt-gaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||||| ||||||||||||||| ||  |||||| |||| |||| ||||||||   |||||||||||||||||||||||||||||||    
T  53760825 aatgttttgagggaattcaaatattttgatgtgaattctattgtttggataataatttgaagaatttttaaaatgatggaaatttatgaa 53760736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 378 - 465
Target Start/End: Original strand, 4490070 - 4490153
Alignment:
Q  378 aatgttttgaaggaattcaaatatttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatga 465  Q
    |||||||||| |||||| ||||||||    ||||||||||| |||| ||||||||  |||||||||| ||||||||||||||||||||    
T  4490070 aatgttttgagggaatttaaatattt----tgaattttattgtttggataataatttaaagaattttcaaaatgatggaaatttatga 4490153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 29091174 - 29091264
Alignment:
Q  377 taatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    ||||||||||| |||||||||||| |||||  |||||| |||| |||| ||||||||   ||||||||| |||||||||||||||||||||    
T  29091174 taatgttttgagggaattcaaatactttgatgtgaattctattgtttggataataatttgaagaattttcaaaatgatggaaatttatgaa 29091264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 369 - 466
Target Start/End: Original strand, 41139502 - 41139600
Alignment:
Q  369 aggtaatttaatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    ||||||| ||||||||||| | |||||||||| ||| |  |||||| |||| |||| ||||||||  |||||||||||||||||||| |||||||||||    
T  41139502 aggtaatgtaatgttttgaggaaattcaaatacttttaggtgaattctattgtttggataataatttaaagaatttttaaaatgatgaaaatttatgaa 41139600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 466
Target Start/End: Complemental strand, 40338287 - 40338198
Alignment:
Q  378 aatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||||| |||||||||||| |||||  ||||||| ||| |||| ||||||||  | |||||||| |||||||||||||||||||||    
T  40338287 aatgttttgatggaattcaaatactttgaggtgaatttcattgtttggataataatttacagaattttcaaaatgatggaaatttatgaa 40338198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 466
Target Start/End: Original strand, 56339171 - 56339260
Alignment:
Q  378 aatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||||| |||||||||||| |||||  ||||||| ||| |||| ||||||||   ||||||||| |||||||||||||||||||||    
T  56339171 aatgttttgagggaattcaaatactttgatgtgaatttcattgtttggataataatttgaagaattttcaaaatgatggaaatttatgaa 56339260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 371 - 466
Target Start/End: Complemental strand, 19461778 - 19461682
Alignment:
Q  371 gtaatttaatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    ||||| |||||||||||  ||||||||||| ||||| || |||| |||| |||| |||||||||   |||||||||| |||||||||||||||||||    
T  19461778 gtaatgtaatgttttgagcgaattcaaataatttgatataaattctattgtttggataataatatggagaatttttagaatgatggaaatttatgaa 19461682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 421 - 466
Target Start/End: Original strand, 17727010 - 17727055
Alignment:
Q  421 ttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||    
T  17727010 ttgaataataatataaagaatttttaaaatgatgaaaatttatgaa 17727055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 378 - 466
Target Start/End: Original strand, 42775643 - 42775732
Alignment:
Q  378 aatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||||| |||||||||||| |||||  ||||||  ||| |||| ||||||||  ||| |||||| ||||| |||||||||||||||    
T  42775643 aatgttttgagggaattcaaatactttgaggtgaattccattgtttggataataatttaaataattttcaaaataatggaaatttatgaa 42775732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 462
Target Start/End: Complemental strand, 46243130 - 46243047
Alignment:
Q  378 aatgttttgaaggaattcaaatatttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaattta 462  Q
    ||||||||||  ||||||||||||||||  | ||||  ||| |||| ||||||||  |||||||||| |||||||||||||||||    
T  46243130 aatgttttgagagaattcaaatatttgaggt-aattccattgtttggataataatttaaagaattttcaaaatgatggaaattta 46243047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 466
Target Start/End: Original strand, 2125854 - 2125984
Alignment:
Q  338 cttagagtgtgtttggacgagggaatgtcta-aggtaatttaatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataataca 435  Q
    ||||||||||||||||| | |||||| | |  ||| ||| || |||||||| |||||||||||| ||||   ||||||  ||| |||| ||||||||       
T  2125854 cttagagtgtgtttggatgggggaatattttgagggaatgtattgttttgagggaattcaaatactttggggtgaattccattgtttggataataatttg 2125953  T
Q  436 aagaatttttaaaatgatggaaatttatgaa 466  Q
    ||| ||||| |||||||||||||||||||||    
T  2125954 aagcattttcaaaatgatggaaatttatgaa 2125984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 426
Target Start/End: Complemental strand, 15660345 - 15660255
Alignment:
Q  338 cttagagtgtgtttggacgagggaatg-tctaaggtaatttaatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaat 426  Q
    ||||||||||||||||| ||||||||| | | ||| ||| ||||||||||| ||||||||| || |||||  |||||| |||| |||||||    
T  15660345 cttagagtgtgtttggatgagggaatgttttgagggaatgtaatgttttgagggaattcaactactttgagctgaattctattgtttgaat 15660255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 420 - 466
Target Start/End: Original strand, 24705432 - 24705478
Alignment:
Q  420 tttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||||||||   |||||||||||||||||| ||||||||||||    
T  24705432 tttgaataataatttgaagaatttttaaaatgatagaaatttatgaa 24705478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 26534530 - 26534620
Alignment:
Q  377 taatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    ||||||||||| |||||||||||| ||||   |||||| |||| |||| ||||||||   ||||||||| |||||||| |||||| |||||    
T  26534530 taatgttttgagggaattcaaatactttgttgtgaattctattgtttggataataatttcaagaattttcaaaatgatagaaattcatgaa 26534620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 466
Target Start/End: Complemental strand, 46242580 - 46242490
Alignment:
Q  377 taatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||||||||||||  ||||| |||||  ||||||  ||| |||| | ||||||   ||||||||| |||||||||||||||||||||    
T  46242580 taatgttttgaaggaatcaaaatactttgaggtgaattccattgtttggagaataatttgaagaattttcaaaatgatggaaatttatgaa 46242490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 462
Target Start/End: Original strand, 17727103 - 17727188
Alignment:
Q  378 aatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaattta 462  Q
    |||||||||  |||||||||||| |||||  ||||||| ||| |||| ||||||||   ||||||||| ||||| |||||||||||    
T  17727103 aatgttttgtgggaattcaaatactttgaggtgaatttcattgtttggataataatttgaagaattttcaaaattatggaaattta 17727188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 466
Target Start/End: Complemental strand, 27284685 - 27284608
Alignment:
Q  390 gaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    ||||||||||| |||||  ||||||| ||| |||| ||||| ||   || ||||||||||||||||||||||||||||    
T  27284685 gaattcaaatactttgaggtgaatttcattgtttgtataatgatttgaataatttttaaaatgatggaaatttatgaa 27284608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 466
Target Start/End: Complemental strand, 52295080 - 52294991
Alignment:
Q  378 aatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    ||||||| || |||||||||||| ||||| | |||||| ||| |||| ||||||||   ||||||||| |||||||||  ||||||||||    
T  52295080 aatgtttcgagggaattcaaatattttgagacgaatttcattgtttggataataatttgaagaattttcaaaatgatgagaatttatgaa 52294991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 4112 - 4202
Alignment:
Q  377 taatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    ||||||||||| |||||||||||| |||||  |||||| |||| |||| ||||||||   ||||||||| |||||||||||||||||||||    
T  4112 taatgttttgagggaattcaaatactttgaggtgaattctattgtttggataataatttgaagaattttcaaaatgatggaaatttatgaa 4202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 466
Target Start/End: Original strand, 24044958 - 24045087
Alignment:
Q  339 ttagagtgtgtttggacgagggaatgtcta-aggtaatttaatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaa 436  Q
    |||||||||||||||| |||||||||| |  ||| ||| ||||||||||||||||||||||||  ||||  ||||||  ||| ||||  ||||| |   |    
T  24044958 ttagagtgtgtttggatgagggaatgttttgagggaatgtaatgttttgaaggaattcaaataccttgaggtgaattccattgtttgggtaatagtttga 24045057  T
Q  437 agaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||| |||||||||||||||||||||    
T  24045058 agaattttcaaaatgatggaaatttatgaa 24045087  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 466
Target Start/End: Original strand, 33985998 - 33986131
Alignment:
Q  335 aatcttagagtgtgtttggacgagggaatgtcta-aggtaatttaatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataat 432  Q
    ||||| |||||||||||||| | ||||||||||  | ||||| |||||||||||  ||||||||||| |||||  ||||||| ||| |||  ||||||||    
T  33985998 aatctaagagtgtgtttggatgggggaatgtcttgaagtaatgtaatgttttgagagaattcaaatactttgaggtgaatttcattgtttagataataat 33986097  T
Q  433 acaaagaatttttaaaatgatggaaatttatgaa 466  Q
       ||||||||| ||||||||||||||| |||||    
T  33986098 ttgaagaattttcaaaatgatggaaattcatgaa 33986131  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 466
Target Start/End: Original strand, 34008819 - 34008908
Alignment:
Q  378 aatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||||| |||||||||||| |||||  ||||||  ||| |||| ||||||||  |||||||||| |||||||||||||||||||||    
T  34008819 aatgttttgagggaattcaaatactttgaggtgaattccattgtttggataataatttaaagaattttcaaaatgatggaaatttatgaa 34008908  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 371 - 466
Target Start/End: Complemental strand, 31976634 - 31976538
Alignment:
Q  371 gtaatttaatgttttgaaggaattcaaatattt-gaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    ||||| ||||| ||||| | ||||||||||||| || |||||||| ||| |||| ||||||||   ||||||||| |||||||||||||||||||||    
T  31976634 gtaatgtaatgctttgaggaaattcaaatattttgagatgaatttcattgtttggataataatttgaagaattttcaaaatgatggaaatttatgaa 31976538  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 337 - 465
Target Start/End: Complemental strand, 28324749 - 28324619
Alignment:
Q  337 tcttagagtgtgtttggacgagggaatgtcta-aggtaatttaatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatac 434  Q
    |||||||||||||||||| |  ||||||| |  ||| ||| ||||||||||||||||||||||||  ||||  ||||||  ||| |||| |||||| |      
T  28324749 tcttagagtgtgtttggatggaggaatgttttgagggaatgtaatgttttgaaggaattcaaataccttgagctgaattacattgtttggataatagttt 28324650  T
Q  435 aaagaatttttaaaatgatggaaatttatga 465  Q
     ||||||||| ||||||||||||||||||||    
T  28324649 gaagaattttcaaaatgatggaaatttatga 28324619  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 369 - 466
Target Start/End: Complemental strand, 35404796 - 35404698
Alignment:
Q  369 aggtaatttaatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    ||||||| |||| |||||| | |||||||||| |||||  ||||||||| | |||| |||||||| | |||| ||||||||||||| ||||||||||||    
T  35404796 aggtaatgtaatattttgaggaaattcaaatactttgaggtgaattttactgtttggataataattccaagagtttttaaaatgatagaaatttatgaa 35404698  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 466
Target Start/End: Complemental strand, 26520484 - 26520395
Alignment:
Q  378 aatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||||| |||||||||||| |||||  ||||||  ||| |||| ||||||||   ||||||||| |||||||||||||||||||||    
T  26520484 aatgttttgagggaattcaaatactttgaggtgaattccattgtttggataataatttgaagaattttcaaaatgatggaaatttatgaa 26520395  T

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Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 466
Target Start/End: Original strand, 34388561 - 34388634
Alignment:
Q  393 ttcaaatatttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||||||||  ||||||  ||| |||| ||||||||  |||||| |||||||||||||||||||||||||    
T  34388561 ttcaaatatttgaggtgaattccattgtttggataataatttaaagaacttttaaaatgatggaaatttatgaa 34388634  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 8049291 - 8049381
Alignment:
Q  377 taatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    ||||||||||| |||||||||||| |||||  | ||||| ||| |||| ||||||||   ||||||||| |||||||| ||||||||||||    
T  8049291 taatgttttgagggaattcaaatactttgaggtaaatttcattgtttggataataatttgaagaattttcaaaatgattgaaatttatgaa 8049381  T

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Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 466
Target Start/End: Complemental strand, 24510279 - 24510233
Alignment:
Q  420 tttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||||||||   |||||||||||||||||||||||||||||||    
T  24510279 tttgaataataatttgaagaatttttaaaatgatggaaatttatgaa 24510233  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 466
Target Start/End: Original strand, 6416227 - 6416311
Alignment:
Q  383 tttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||| ||||||||| |||||| ||||||  ||| |||  ||||||||   ||||||||| |||||||||||||||||||||    
T  6416227 tttgaagggattcaaatactttgaagtgaattccattgttttgataataatttgaagaattttcaaaatgatggaaatttatgaa 6416311  T

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Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 466
Target Start/End: Original strand, 9982663 - 9982763
Alignment:
Q  367 taaggtaatttaatgttttgaaggaattcaaatattt-gaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatga 465  Q
    ||||||||| |||||||||||  ||||| |||||||| ||  ||||||  ||| |||  ||||||||   ||||||||||||||||||| ||||||||||    
T  9982663 taaggtaatgtaatgttttgagagaatttaaatattttgaggtgaattccattgtttagataataatttgaagaatttttaaaatgatgaaaatttatga 9982762  T
Q  466 a 466  Q
    |    
T  9982763 a 9982763  T

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Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 466
Target Start/End: Complemental strand, 29257438 - 29257307
Alignment:
Q  337 tcttagagtgtgtttggacgagggaatgtcta-aggtaatttaatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatac 434  Q
    |||||||||||||||||| | |||||||| |  ||| ||| || |||||| | |||||||||||| ||||   ||||||  ||| |||| ||||||||      
T  29257438 tcttagagtgtgtttggatgggggaatgttttgagggaatgtattgttttaagggaattcaaatactttggggtgaattccattgtttggataataattt 29257339  T
Q  435 aaagaatttttaaaatgatggaaatttatgaa 466  Q
     ||| ||||| |||||||||||||||||||||    
T  29257338 gaagcattttcaaaatgatggaaatttatgaa 29257307  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 454
Target Start/End: Original strand, 29611408 - 29611485
Alignment:
Q  378 aatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatg 454  Q
    |||||||||| |||||||||||| |||||  ||||||| ||| |||| ||||||||   ||||||||| |||||||||    
T  29611408 aatgttttgagggaattcaaatactttgaggtgaatttcattgtttggataataatttgaagaattttcaaaatgatg 29611485  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 466
Target Start/End: Original strand, 44889352 - 44889481
Alignment:
Q  339 ttagagtgtgtttggacgagggaatgtcta-aggtaatttaatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaa 436  Q
    |||||||||||||||| |  ||||||| |  ||| ||| ||||||||||| |||||||||||| |||||  ||||||  ||| |||| ||||||||        
T  44889352 ttagagtgtgtttggatggaggaatgttttgagggaatataatgttttgagggaattcaaatactttgatgtgaattccattgtttggataataatttgt 44889451  T
Q  437 agaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||| | ||||||| |||||||||||    
T  44889452 agaattttcataatgatgaaaatttatgaa 44889481  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 379 - 466
Target Start/End: Original strand, 31412940 - 31413028
Alignment:
Q  379 atgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    ||||||||| |||||||||||| ||||| |||||||  ||| |||| ||||||||   ||||||||| |||||||||||||||||||||    
T  31412940 atgttttgagggaattcaaatactttgatatgaattccattgtttggataataatttgaagaattttcaaaatgatggaaatttatgaa 31413028  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 466
Target Start/End: Complemental strand, 15616365 - 15616307
Alignment:
Q  408 tgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||| |||| |||| ||||||||  |||||||||||||||||||| |||||||||||    
T  15616365 tgaattctattgtttggataataatttaaagaatttttaaaatgatgcaaatttatgaa 15616307  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 466
Target Start/End: Original strand, 28918165 - 28918292
Alignment:
Q  341 agagtgtgtttggacgagggaatgtcta-aggtaatttaatgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaag 438  Q
    |||||||||||||| |  ||||||| |  ||| ||| ||||||||| | | |||||||||| |||||  ||||||| ||| |||| ||||||||   |||    
T  28918165 agagtgtgtttggatggaggaatgttttgagggaatgtaatgttttaaggaaattcaaatactttgaggtgaatttcattgtttggataataatttgaag 28918264  T
Q  439 aatttttaaaatgatggaaatttatgaa 466  Q
     ||||| |||||||||||||||||||||    
T  28918265 gattttcaaaatgatggaaatttatgaa 28918292  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 408 - 466
Target Start/End: Original strand, 1368546 - 1368604
Alignment:
Q  408 tgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||| |||| |||| |||||||||  ||| ||||| |||||||||||||||||||||    
T  1368546 tgaattctattgtttggataataatatgaaggattttcaaaatgatggaaatttatgaa 1368604  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 466
Target Start/End: Original strand, 9697501 - 9697589
Alignment:
Q  379 atgttttgaaggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||||||||||||||||| |||||  ||||||  ||| |||| |||||| |   | ||||||| ||||||||| |||||||||||    
T  9697501 atgttttgaaggaattcaaatactttgatgtgaattccattgtttggataatagtttgatgaattttcaaaatgatgaaaatttatgaa 9697589  T

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Target: scaffold0400 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 466
Target Start/End: Complemental strand, 4570 - 4444
Alignment:
Q  342 gagtgtgtttggacgagggaatgtcta-aggtaatttaatgttttgaaggaattcaaatattt-gaaatgaattttattctttgaataataatacaaaga 439  Q
    ||||||||||||| |||||||||| |  ||| ||| ||||||||||| | ||||||||||||| |   ||||||  ||| |||| ||||||||   |||     
T  4570 gagtgtgtttggatgagggaatgttttgagggaatataatgttttgaggaaattcaaatattttggggtgaattccattgtttggataataatttgaagc 4471  T
Q  440 atttttaaaatgatggaaatttatgaa 466  Q
    ||||| |||||||||||||||||||||    
T  4470 attttcaaaatgatggaaatttatgaa 4444  T

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Target: scaffold0365 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 466
Target Start/End: Complemental strand, 5214 - 5088
Alignment:
Q  342 gagtgtgtttggacgagggaatgtcta-aggtaatttaatgttttgaaggaattcaaatattt-gaaatgaattttattctttgaataataatacaaaga 439  Q
    ||||||||||||| |||||||||| |  ||| ||| ||||||||||| | ||||||||||||| |   ||||||  ||| |||| ||||||||   |||     
T  5214 gagtgtgtttggatgagggaatgttttgagggaatataatgttttgaggaaattcaaatattttggggtgaattccattgtttggataataatttgaagc 5115  T
Q  440 atttttaaaatgatggaaatttatgaa 466  Q
    ||||| |||||||||||||||||||||    
T  5114 attttcaaaatgatggaaatttatgaa 5088  T

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Target: scaffold0129 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 377 - 469
Target Start/End: Original strand, 19235 - 19327
Alignment:
Q  377 taatgttttgaaggaattcaaatattt-gaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaacta 469  Q
    ||||||||||| ||||||||||||||| ||  ||||||  ||| |||  ||||||||   ||||||||| ||||||||||||||||||||||||    
T  19235 taatgttttga-ggaattcaaatattttgaggtgaattccattgtttcgataataatttgaagaattttaaaaatgatggaaatttatgaacta 19327  T

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Target: scaffold0047 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 466
Target Start/End: Complemental strand, 50331 - 50253
Alignment:
Q  389 ggaattcaaata-tttgaaatgaattttattctttgaataataatacaaagaatttttaaaatgatggaaatttatgaa 466  Q
    |||||||||||| |||||  ||||||  ||| |||||||||||||   |||| |||| |||||||||||||||||||||    
T  50331 ggaattcaaatactttgatgtgaattccattgtttgaataataatttgaagagttttcaaaatgatggaaatttatgaa 50253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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