View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_24 (Length: 469)
Name: NF1314_low_24
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 30 - 364
Target Start/End: Original strand, 17854899 - 17855234
Alignment:
| Q |
30 |
ataagtccagtgtttaaccgaatcattgtgatgccaatcttcaccttcatgaagcttggcatgatgaactctttcacaaactttgtgcacttcgtgaagt |
129 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17854899 |
ataagtccagtgtttaaccgaatcattgtgatgccaatcttcaccttcatgaagcttggcatgatgaactctttcacaaactttgtgcacttcgtgaagt |
17854998 |
T |
|
| Q |
130 |
tctgatgcaaatagtttgaagaacttctcccctggtgatttgatcccaagttcagtgataagtttaccagcaagcaccatttttgtagagnnnnnnnnct |
229 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
17854999 |
tctgatgcaaatagtttgaagaacttctcccctggtgatttgatcccaagttcagtgataagtttaccagcaagcaccatttttgtagagaaaaaaaact |
17855098 |
T |
|
| Q |
230 |
aaatacacaataatagaaagaaagaaacagcagacccaacaaataaggaaagttttatgat---atgatggtttatgaaaccacacacgacttaaataga |
326 |
Q |
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|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
17855099 |
aaatacacaataatagaaagaaagaaatagcagacccaacaaataaggaaagttttatgatatgatgatggtttatgaaac--cacacgacttaaataga |
17855196 |
T |
|
| Q |
327 |
aattttttactatgcagtagacccaacaaattaaatta |
364 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| |
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| T |
17855197 |
aaatttttactatgcagtagacccaacaaattaaatta |
17855234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 33 - 331
Target Start/End: Original strand, 17846025 - 17846321
Alignment:
| Q |
33 |
agtccagtgtttaaccgaatcattgtgatgccaatcttcaccttcatgaagcttggcatgatgaactctttcacaaactttgtgcacttcgtgaagttct |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||| |
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| T |
17846025 |
agtccagtgtttaaccgaatcattgtgatgccaatcttcaccttcatgaagcttggcatgatgaattctttcacaaactttttgcacttcgtggagttct |
17846124 |
T |
|
| Q |
133 |
gatgcaaatagtttgaagaacttctcccctggtgatttgatcccaagttcagtgataagtttaccagcaagcaccatttttg--tagagnnnnnnnncta |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| | ||||||||||||| ||| ||| |
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|
| T |
17846125 |
gatgcaaatagtttgaagaacttctcccctggtgctttaatcccaagttcagtgataagtttaccaacgagcaccatttttggaaagaaaaaaaaaacta |
17846224 |
T |
|
| Q |
231 |
aatacacaataatagaaagaaagaaacagcagacccaacaaataaggaaagttttatgatatgatggtttatgaaaccacacacgacttaaatagaaatt |
330 |
Q |
| |
|
|||||||||||||||||||||||| | ||| || |||||||| | ||||||||||||||||||||||||||| |||| | |||||||||||||| |
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| T |
17846225 |
aatacacaataatagaaagaaagagaagaaagaaaca--aaataagggatgttttatgatatgatggtttatgaaac--cacatgccttaaatagaaatt |
17846320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 30 - 214
Target Start/End: Original strand, 17870414 - 17870598
Alignment:
| Q |
30 |
ataagtccagtgtttaaccgaatcattgtgatgccaatcttcaccttcatgaagcttggcatgatgaactctttcacaaactttgtgcacttcgtgaagt |
129 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||| ||||||||||||||||||||| || ||||||||||||||| |
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|
| T |
17870414 |
ataagtccagtgtttaaccgaatcagtatgatgccaatcttcaccctcatgaagcttggtatgatgaactctttcacaaacattttgcacttcgtgaagt |
17870513 |
T |
|
| Q |
130 |
tctgatgcaaatagtttgaagaacttctcccctggtgatttgatcccaagttcagtgataagtttaccagcaagcaccatttttg |
214 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
17870514 |
tctgatgcaaatagtttgaagaacttttcagctggtgttttgatcccaagttcagtaataagtttaccagcaagcaccatttttg |
17870598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 32 - 214
Target Start/End: Original strand, 17821105 - 17821287
Alignment:
| Q |
32 |
aagtccagtgtttaaccgaatcattgtgatgccaatcttcaccttcatgaagcttggcatgatgaactctttcacaaactttgtgcacttcgtgaagttc |
131 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||| || ||||||||||||||||| |
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|
| T |
17821105 |
aagtccaatgtttaaccgaatcattgtgatgccaatgttcaccttcgtgaagcttaccatgatgaactctttcacaaacgttatgcacttcgtgaagttc |
17821204 |
T |
|
| Q |
132 |
tgatgcaaatagtttgaagaacttctcccctggtgatttgatcccaagttcagtgataagtttaccagcaagcaccatttttg |
214 |
Q |
| |
|
||||||| || |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
17821205 |
tgatgcatattgtttgaagaacttctcccctggtgctttaatcccaagttcagtgataagtttaccagctagcaccatttttg |
17821287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 30 - 214
Target Start/End: Original strand, 17923263 - 17923447
Alignment:
| Q |
30 |
ataagtccagtgtttaaccgaatcattgtgatgccaatcttcaccttcatgaagcttggcatgatgaactctttcacaaactttgtgcacttcgtgaagt |
129 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| ||| || ||||||||||||||| |
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|
| T |
17923263 |
ataagtccagtgtttaaccgaatcactgtgatgccaatcttcaccttcatgaagcttggtatgatgacatctttcaacaacgttttgcacttcgtgaagt |
17923362 |
T |
|
| Q |
130 |
tctgatgcaaatagtttgaagaacttctcccctggtgatttgatcccaagttcagtgataagtttaccagcaagcaccatttttg |
214 |
Q |
| |
|
| | ||||||||||| |||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17923363 |
tgagttgcaaatagttggaagaacttctcaccgggtgttttgatcccaagttcagtgataagtttaccagcaagcaccatttttg |
17923447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 30 - 212
Target Start/End: Original strand, 17802262 - 17802444
Alignment:
| Q |
30 |
ataagtccagtgtttaaccgaatcattgtgatgccaatcttcaccttcatgaagcttggcatgatgaactctttcacaaactttgtgcacttcgtgaagt |
129 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||| ||| |||||||| |||||| |
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|
| T |
17802262 |
ataagtccagtgtttaaccgaatcagtgtgatgccaatcttcaccttcatgaagtttggtatgatgaactctttcacagtgtttttgcacttcatgaagt |
17802361 |
T |
|
| Q |
130 |
tctgatgcaaatagtttgaagaacttctcccctggtgatttgatcccaagttcagtgataagtttaccagcaagcaccatttt |
212 |
Q |
| |
|
|||||||||||||||||||||||| | || | |||| |||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
17802362 |
tctgatgcaaatagtttgaagaacctatcagcgggtgttttgatcccaagttcagtcataagtttaccagcaagcaccatttt |
17802444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 30 - 211
Target Start/End: Original strand, 17718166 - 17718347
Alignment:
| Q |
30 |
ataagtccagtgtttaaccgaatcattgtgatgccaatcttcaccttcatgaagcttggcatgatgaactctttcacaaactttgtgcacttcgtgaagt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| || || ||||||||||||||| |
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|
| T |
17718166 |
ataagtccagtgtttaaccgaatcattgtgatgccaatcttcaccttcatgaagtttggcaccatgaactctttcactaatgttttgcacttcgtgaagt |
17718265 |
T |
|
| Q |
130 |
tctgatgcaaatagtttgaagaacttctcccctggtgatttgatcccaagttcagtgataagtttaccagcaagcaccattt |
211 |
Q |
| |
|
|||||||||||||||||||||||||| || | |||| |||||||||||||||||| |||||||||| || |||||||||| |
|
|
| T |
17718266 |
tctgatgcaaatagtttgaagaacttgtcgacgggtgttttgatcccaagttcagtactaagtttaccggcgagcaccattt |
17718347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 30 - 133
Target Start/End: Original strand, 17781265 - 17781368
Alignment:
| Q |
30 |
ataagtccagtgtttaaccgaatcattgtgatgccaatcttcaccttcatgaagcttggcatgatgaactctttcacaaactttgtgcacttcgtgaagt |
129 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| || |||||||| |||||| |
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|
| T |
17781265 |
ataagtccagtgtttaaccgaatcagtgtgatgccaatcttcaccttcatgaagtttggtatgatgaactctttcacaaaggttttgcacttcatgaagt |
17781364 |
T |
|
| Q |
130 |
tctg |
133 |
Q |
| |
|
|||| |
|
|
| T |
17781365 |
tctg |
17781368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 33 - 213
Target Start/End: Original strand, 17692825 - 17693005
Alignment:
| Q |
33 |
agtccagtgtttaaccgaatcattgtgatgccaatcttcaccttcatgaagcttggcatgatgaactctttcacaaactttgtgcacttcgtgaagttct |
132 |
Q |
| |
|
||||||||||||||| |||||| ||||||||| || ||||||| ||| ||||||| | |||||| |||||||||| || ||||||||||||| | | |
|
|
| T |
17692825 |
agtccagtgtttaactgaatcagagtgatgccattcatcaccttgatgcagcttggtttcatgaacactttcacaaatgttttgcacttcgtgaatattt |
17692924 |
T |
|
| Q |
133 |
gatgcaaatagtttgaagaacttctcccctggtgatttgatcccaagttcagtgataagtttaccagcaagcaccattttt |
213 |
Q |
| |
|
||||| ||||||||||||||||| || | || ||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
17692925 |
gatgcgaatagtttgaagaacttgtcagaggatgctttgatcccaatttcagtactaagtttaccagcaagcaccattttt |
17693005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 30 - 198
Target Start/End: Original strand, 17814093 - 17814261
Alignment:
| Q |
30 |
ataagtccagtgtttaaccgaatcattgtgatgccaatcttcaccttcatgaagcttggcatgatgaactctttcacaaactttgtgcacttcgtgaagt |
129 |
Q |
| |
|
||||||||| |||||||||| |||| ||||||||||||| ||||||| ||| ||||||| | |||||||||||||||| | |||| ||| |||||| |
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|
| T |
17814093 |
ataagtccaatgtttaaccgtatcagtgtgatgccaatcatcaccttgatgcagcttggtttcatgaactctttcacaatggatttgcatttcatgaagt |
17814192 |
T |
|
| Q |
130 |
tctgatgcaaatagtttgaagaacttctcccctggtgatttgatcccaagttcagtgataagtttacca |
198 |
Q |
| |
|
| || |||||| | ||| ||||||| || | | || |||||||||||||||||| ||||||||||| |
|
|
| T |
17814193 |
tgtgttgcaaagaaattgtagaacttgtcaacggatgctttgatcccaagttcagtactaagtttacca |
17814261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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