View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_27 (Length: 459)
Name: NF1314_low_27
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 144 - 450
Target Start/End: Original strand, 13113971 - 13114277
Alignment:
| Q |
144 |
ataaaaataattcaagatggtttcgaagaaattggtagaaggtacatacgatagggagtacagggtacaatctcaatgtctctgcgagtgttgcatgaag |
243 |
Q |
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| T |
13113971 |
ataaaaataattcaagatggttttgaagaaattggtagaaggtacatacaacagggagtacagggtacaatctcaatgtctctgtgagtgttgcatgaag |
13114070 |
T |
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| Q |
244 |
ataatgcattttatcaagtattaagtctgttaaattggcaacaaactcatctatgctgttgagttcactttcatggctacaagtaacatctcttatttct |
343 |
Q |
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| T |
13114071 |
ataatgcattttatcgagtattaagtctgttaaattggcaacaaactcatctatgctgttgagttcactttcatggctacaagtaacatctcttatttct |
13114170 |
T |
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| Q |
344 |
tgcacaatcttgtcctctacaagagggttcttgcatagcatatagaagaaccatgaaagagtatttgcagtagtgtctttgccagctatcataaagttga |
443 |
Q |
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| T |
13114171 |
tgcacaatcttgtcctctacaagagggttcttgcatagcatatagaagaaccatgaaagagtatttgcagtagtgtctttgccagctatcataaagttga |
13114270 |
T |
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| Q |
444 |
gaattat |
450 |
Q |
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||||||| |
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| T |
13114271 |
gaattat |
13114277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 146 - 450
Target Start/End: Original strand, 13102999 - 13103303
Alignment:
| Q |
146 |
aaaaataattcaagatggtttcgaagaaattggtagaaggtacatacgatagggagtacagggtacaatctcaatgtctctgcgagtgttgcatgaagat |
245 |
Q |
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|||||||| | |||||||||||||||||||||||||||||||||||| ||||| | ||||| ||||||||||||||||||| ||||| ||||||||||| |
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| T |
13102999 |
aaaaataacttaagatggtttcgaagaaattggtagaaggtacatacaataggaacaacaggatacaatctcaatgtctctgtgagtgctgcatgaagat |
13103098 |
T |
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| Q |
246 |
aatgcattttatcaagtattaagtctgttaaattggcaacaaactcatctatgctgttgagttcactttcatggctacaagtaacatctcttatttcttg |
345 |
Q |
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||||||||||||||||||||| || ||||||||| || |||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
13103099 |
aatgcattttatcaagtattacatccgttaaattgccagcaaattcatctatgttgttgagttcactttcatggctacaagtaacatcttttatttcttg |
13103198 |
T |
|
| Q |
346 |
cacaatcttgtcctctacaagagggttcttgcatagcatatagaagaaccatgaaagagtatttgcagtagtgtctttgccagctatcataaagttgaga |
445 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||| |
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| T |
13103199 |
cacaatcttgtcctctacaagagggttcttgcatagcatatagaagaaccatgaaagagtgtttgcagtggtatctttgccagctatcataaagttgaga |
13103298 |
T |
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| Q |
446 |
attat |
450 |
Q |
| |
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||||| |
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| T |
13103299 |
attat |
13103303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 147 - 450
Target Start/End: Original strand, 13097848 - 13098149
Alignment:
| Q |
147 |
aaaataattcaagatggtttcgaagaaattggtagaaggtacatacgatagggagtacagggtacaatctcaatgtctctgcgagtgttgcatgaagata |
246 |
Q |
| |
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||||||| ||||||||||| ||| |||| |||||||||||||| | ||||| |||||||||||||| || ||||||| ||||| |||||||||||| |
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| T |
13097848 |
aaaataactcaagatggttgagaa--aatttatagaaggtacataccacagggacaacagggtacaatcttaaggtctctgtgagtgctgcatgaagata |
13097945 |
T |
|
| Q |
247 |
atgcattttatcaagtattaagtctgttaaattggcaacaaactcatctatgctgttgagttcactttcatggctacaagtaacatctcttatttcttgc |
346 |
Q |
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||||||||||||||||||| ||||||||| ||||| | |||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
13097946 |
atgcattttatcaagtattgagtctgttagattggtagcaaactcatctatgttgctgagttcactttcatggaaacaagtaacatctcttatttcttgc |
13098045 |
T |
|
| Q |
347 |
acaatcttgtcctctacaagagggttcttgcatagcatatagaagaaccatgaaagagtatttgcagtagtgtctttgccagctatcataaagttgagaa |
446 |
Q |
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|||||||||||||| |||| |||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
13098046 |
acaatcttgtcctccacaatagggttcttgcataacatgtagaagaaccatgaaagagtatttgcagtggtgtctttgccagctatcataaagttgagaa |
13098145 |
T |
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| Q |
447 |
ttat |
450 |
Q |
| |
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|||| |
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| T |
13098146 |
ttat |
13098149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 364 - 450
Target Start/End: Original strand, 13078092 - 13078178
Alignment:
| Q |
364 |
aagagggttcttgcatagcatatagaagaaccatgaaagagtatttgcagtagtgtctttgccagctatcataaagttgagaattat |
450 |
Q |
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||||||||||||||| ||||| |||||||||||||| | |||||| ||| | |||||||| ||||| ||||||||||| |||||||| |
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| T |
13078092 |
aagagggttcttgcaaagcatgtagaagaaccatgacaaagtattggcacttgtgtcttttccagcaatcataaagttcagaattat |
13078178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 99 - 145
Target Start/End: Original strand, 13113782 - 13113828
Alignment:
| Q |
99 |
gtttataggtgcattttaacatggaaatatttagattacagtcacat |
145 |
Q |
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| T |
13113782 |
gtttataggtgcattttaacatggaaatatttagattacagtcacat |
13113828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 99 - 145
Target Start/End: Complemental strand, 18670840 - 18670794
Alignment:
| Q |
99 |
gtttataggtgcattttaacatggaaatatttagattacagtcacat |
145 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18670840 |
gtttataggtgcattttaacatggaaatatttagattacagtcacat |
18670794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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