View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_28 (Length: 454)
Name: NF1314_low_28
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 69 - 290
Target Start/End: Complemental strand, 43078895 - 43078674
Alignment:
| Q |
69 |
agctaaatttgtatttctgttttatctcatttcacaccattctagatctttacaccttacatcgctattaccaatagttaatatattagttacattaaat |
168 |
Q |
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| T |
43078895 |
agctaaatttgtatttctgttttatctcatttcacaccattctagatctttacaccttacatcgctattaccaatagttaatatattagttacattaaat |
43078796 |
T |
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| Q |
169 |
caatgagatcaaattattgctactgtatcttctgatttttcaaaacaatgggacaagctctaaataatgctccattgttataatacgggtttgattttga |
268 |
Q |
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| T |
43078795 |
caatgagatcaaattattgctattgtatcttctgatttttcaaaacaatgggacaagctctaaataatgctccattgttataatacgggtttgattttga |
43078696 |
T |
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| Q |
269 |
gactttgatcttgtctacagtg |
290 |
Q |
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| T |
43078695 |
gactttgatcttgtctatagtg |
43078674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 306 - 454
Target Start/End: Complemental strand, 43077837 - 43077689
Alignment:
| Q |
306 |
gtcatgctcattatttttcacttttgtaaataatgtttatcctctatgcatacaacatcatttctggtttgtttaatttctgttgtaaatttgaacattt |
405 |
Q |
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| T |
43077837 |
gtcatgctcattatttttaacttttgtaaataatgtttatcctctatgcatacaacatcatttctggtttgtttaatttctgttgtaaatttgaacattt |
43077738 |
T |
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| Q |
406 |
tatttgcaggacccattggttactaaaggaacaagtttggttccattgc |
454 |
Q |
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| T |
43077737 |
tatttgcaggacccattggttactaaaggaacaagtttggttccattgc |
43077689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 27008071 - 27008106
Alignment:
| Q |
7 |
gctaaagtgaaaattggaccatttgggctttttgtt |
42 |
Q |
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| T |
27008071 |
gctaaagtgaaaattggaccatttgggctttttgtt |
27008106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 450
Target Start/End: Original strand, 12036164 - 12036304
Alignment:
| Q |
308 |
catgctcattatttttcacttttgtaaataatgtttatcctctatgcatacaacatcatttctggtttgtttaatttctgttgtaaatttgaacatttta |
407 |
Q |
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| T |
12036164 |
catgctcaataatttaaacttttgtaaacaatttttatcctctatgcatacat-atattttctagttaatttattttcagatttaacct-gaacatttta |
12036261 |
T |
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| Q |
408 |
tttgcaggacccattggttactaaaggaacaagtttggttcca |
450 |
Q |
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| T |
12036262 |
tttgcaggacccactagttactaaagcaccatgtttggttcca |
12036304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 359
Target Start/End: Original strand, 12120787 - 12120839
Alignment:
| Q |
307 |
tcatgctcattatttttcacttttgtaaataatgtttatcctctatgcataca |
359 |
Q |
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| T |
12120787 |
tcatgcccattattttaaacttttataaataatgcttatcctctatgcataca |
12120839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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