View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_29 (Length: 453)
Name: NF1314_low_29
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 7 - 425
Target Start/End: Original strand, 9898277 - 9898695
Alignment:
| Q |
7 |
tccaaaaatatattttagaaatatctctcacaatacctgatgaacaagcagcaataataagaccttctactttcaagttaggtcttagtaattttactaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9898277 |
tccaaaaatatattttagaaatatctctcacaatacctgatgaacaagcagcaataataagaccttctactttcaagttaggtcttagtaattttactaa |
9898376 |
T |
|
| Q |
107 |
taaccatcctaaaatccctccaattaagaaggtgagtccaacattaacaggcataaaccacctgtatcaatcagaaataaacaaattgattaccgtgata |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9898377 |
taaccatcctaaaatccctccaattaagaaggtgagtccaacattaacaggcataaaccacctgtatcaatcagaaataaacaaattgattaccgtgata |
9898476 |
T |
|
| Q |
207 |
gcaaaatcagagctattttctgagagtcgaaaacttaaaagccatatgtaccatgatatcatatcttgaagtgaaacacttttggcaaaacttgaaaata |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9898477 |
gcaaaatcagagctattttctgagagtcgaaaacttaaaagccatatgtaccatgatatcatatcttgaagtgaaacacttttggcaaaacttgaaaata |
9898576 |
T |
|
| Q |
307 |
taagagaaggagtgaatataaagaatacaacctgcaaaacagataaagcnnnnnnncaaaacaaagtcactactttccgattagaatcggctaaggaacc |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9898577 |
taagagaaggagtgaatataaagaatacaacctgcaaaacagataaagcaaaaaaacaaaacaaagtcactactttccgattagaatcggctaaggaacc |
9898676 |
T |
|
| Q |
407 |
ttaaatcaatgaccgaaat |
425 |
Q |
| |
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||||||||||||||||||| |
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| T |
9898677 |
ttaaatcaatgaccgaaat |
9898695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 28 - 345
Target Start/End: Original strand, 9878359 - 9878676
Alignment:
| Q |
28 |
tatctctcacaatacctgatgaacaagcagcaataataagaccttctactttcaagttaggtcttagtaattttactaataaccatcctaaaatccctcc |
127 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9878359 |
tatctctcacaatacctgatgaacaagcagcaataataagaccttctactttcaagttaggtcttagtaattttactaataaccatcctaaaatccctcc |
9878458 |
T |
|
| Q |
128 |
aattaagaaggtgagtccaacattaacaggcataaaccacctgtatcaatcagaaataaacaaattgattaccgtgatagcaaaatcagagctattttct |
227 |
Q |
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| T |
9878459 |
aattaagaaggtgagtccaacattaacaggcataaaccacctgtatcaatcagaaataaacaaattgattaccgtgatagcaaaatcagagttattttct |
9878558 |
T |
|
| Q |
228 |
gagagtcgaaaacttaaaagccatatgtaccatgatatcatatcttgaagtgaaacacttttggcaaaacttgaaaatataagagaaggagtgaatataa |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
9878559 |
gagagtcgaaaacttaaaagccatatgtaccatgatatcatatcttgaagtgaaacacttttagcaaaacttgaaaatataagtgaaggagtgaatataa |
9878658 |
T |
|
| Q |
328 |
agaatacaacctgcaaaa |
345 |
Q |
| |
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||||| |||||||||||| |
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| T |
9878659 |
agaatgcaacctgcaaaa |
9878676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 204 - 353
Target Start/End: Original strand, 9867124 - 9867273
Alignment:
| Q |
204 |
atagcaaaatcagagctattttctgagagtcgaaaacttaaaagccatatgtaccatgatatcatatcttgaagtgaaacacttttggcaaaacttgaaa |
303 |
Q |
| |
|
||||||||||||||| || |||||||||| ||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
9867124 |
atagcaaaatcagagttaaactctgagagtcaaaaacataaaagccatatgtaccatgttatcatagcttgaagtgaaacacttttggcaaaacttgaaa |
9867223 |
T |
|
| Q |
304 |
atataagagaaggagtgaatataaagaatacaacctgcaaaacagataaa |
353 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9867224 |
atataagtgaaggagtgaatataaagaatacaacctgcaaaacaggtaaa |
9867273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 39 - 173
Target Start/End: Original strand, 9908534 - 9908668
Alignment:
| Q |
39 |
atacctgatgaacaagcagcaataataagaccttctactttcaagttaggtcttagtaattttactaataaccatcctaaaatccctccaattaagaagg |
138 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||| |||||||| ||||| |||||||||||||| |||| ||||||||||||||||||||| ||||||| |
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| T |
9908534 |
atacctgatgaacatgaagcaataataagaccttccactttcaaattaggccttagtaattttaccaatatccatcctaaaatccctccaatcaagaagg |
9908633 |
T |
|
| Q |
139 |
tgagtccaacattaacaggcataaaccacctgtat |
173 |
Q |
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| T |
9908634 |
tgagtccaacattaacaggcataaaccacctgtat |
9908668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 39 - 153
Target Start/End: Complemental strand, 9863785 - 9863671
Alignment:
| Q |
39 |
atacctgatgaacaagcagcaataataagaccttctactttcaagttaggtcttagtaattttactaataaccatcctaaaatccctccaattaagaagg |
138 |
Q |
| |
|
||||||||||| || | ||||||||||||||||||||||||||| ||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
9863785 |
atacctgatgagcatgaagcaataataagaccttctactttcaaattaggccttagtaatttaactaatatccatcctaaaatccctccaattaagaagg |
9863686 |
T |
|
| Q |
139 |
tgagtccaacattaa |
153 |
Q |
| |
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||||||||||||||| |
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| T |
9863685 |
tgagtccaacattaa |
9863671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 206 - 347
Target Start/End: Complemental strand, 9863634 - 9863491
Alignment:
| Q |
206 |
agcaaaatcagagctattttctgaga---gtcgaaaacttaaaagccatatgtaccatgatatcatatcttgaagtgaaacacttttggcaaaacttgaa |
302 |
Q |
| |
|
||||||||||||| |||||||||||| || ||||| | ||||| | ||||||||||||||||||||||||||||||||||| || || ||||||| | |
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| T |
9863634 |
agcaaaatcagagttattttctgagaatagtggaaaa-tgaaaagtgacatgtaccatgatatcatatcttgaagtgaaacactctttgctaaacttgca |
9863536 |
T |
|
| Q |
303 |
aatataagagaaggagtgaatataaagaatacaacctgcaaaaca |
347 |
Q |
| |
|
|| | ||| ||||||||||||| || ||| ||||||| ||||||| |
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| T |
9863535 |
aacacaagtgaaggagtgaatacaatgaacacaacctacaaaaca |
9863491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 252 - 347
Target Start/End: Original strand, 9908772 - 9908867
Alignment:
| Q |
252 |
atgtaccatgatatcatatcttgaagtgaaacacttttggcaaaacttgaaaatataagagaaggagtgaatataaagaatacaacctgcaaaaca |
347 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||| || |||||||||| ||| | || ||||||||||||| || ||| ||||||| ||||||| |
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|
| T |
9908772 |
atgtaccatgatatcatatcttcaagcgaaacactctttgcaaaacttgcaaacacgagtgaaggagtgaatacaatgaacacaacctacaaaaca |
9908867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 40 - 170
Target Start/End: Complemental strand, 30946868 - 30946738
Alignment:
| Q |
40 |
tacctgatgaacaagcagcaataataagaccttctactttcaagttaggtcttagtaattttactaataaccatcctaaaatccctccaattaagaaggt |
139 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||| ||| || |||| || || || | || |||||| | |||||||||| ||||||||| |
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|
| T |
30946868 |
tacctgatgaacaagaagcaataataagaccttccactttcatgtttggctttagcaacttaacaattatccatccaaggatccctccaaataagaaggt |
30946769 |
T |
|
| Q |
140 |
gagtccaacattaacaggcataaaccacctg |
170 |
Q |
| |
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|||||| | ||||| ||||||||||||||| |
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|
| T |
30946768 |
gagtccgatgttaactggcataaaccacctg |
30946738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 323
Target Start/End: Complemental strand, 30946608 - 30946538
Alignment:
| Q |
253 |
tgtaccatgatatcatatcttgaagtgaaacacttttggcaaaacttgaaaatataagagaaggagtgaat |
323 |
Q |
| |
|
||||||||||||||||||| | ||| |||||||| || |||||||| | ||||||||| | |||||||||| |
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|
| T |
30946608 |
tgtaccatgatatcatatcatcaagagaaacactctttgcaaaactggcaaatataagtgcaggagtgaat |
30946538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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