View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1314_low_3 (Length: 750)

Name: NF1314_low_3
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1314_low_3
NF1314_low_3
[»] chr1 (5 HSPs)
chr1 (102-326)||(2363793-2364017)
chr1 (603-740)||(2364294-2364431)
chr1 (364-534)||(2364055-2364225)
chr1 (197-238)||(2363748-2363789)
chr1 (197-243)||(52071069-52071115)
[»] chr8 (9 HSPs)
chr8 (197-243)||(22013364-22013410)
chr8 (198-243)||(21961319-21961364)
chr8 (197-253)||(21961580-21961635)
chr8 (197-252)||(21960826-21960880)
chr8 (197-243)||(21960990-21961036)
chr8 (197-243)||(21961744-21961790)
chr8 (197-243)||(22011990-22012036)
chr8 (197-243)||(21961154-21961200)
chr8 (197-243)||(21961416-21961462)
[»] scaffold0015 (5 HSPs)
scaffold0015 (198-243)||(208373-208418)
scaffold0015 (197-253)||(208102-208157)
scaffold0015 (197-243)||(207947-207993)
scaffold0015 (197-243)||(208275-208321)
scaffold0015 (197-243)||(208537-208583)
[»] chr2 (2 HSPs)
chr2 (197-243)||(21502889-21502935)
chr2 (197-243)||(21503053-21503099)
[»] chr4 (2 HSPs)
chr4 (197-244)||(50111276-50111323)
chr4 (197-243)||(50111445-50111491)
[»] scaffold0314 (1 HSPs)
scaffold0314 (197-243)||(19697-19743)


Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-123; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 102 - 326
Target Start/End: Original strand, 2363793 - 2364017
Alignment:
Q  102 ttagtaactatagtttagaccaaaaccatggatagtttggtttgtatgatgatagggagggagactaagctatctaggattctttgttttagttctaatt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2363793 ttagtaactatagtttagaccaaaaccatggatagtttggtttgtatgatgatagggagggagactaagctatctaggattctttgttttagttctaatt 2363892  T
Q  202 tgattagtatgattgtcaaagtatgatgataatagatcaaatagaacaaatatgatgatagggagggagtcttactattgtcaaagtataatttgcttca 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2363893 tgattagtatgattgtcaaagtatgatgataatagatcaaatagaacaaatatgatgatagggagggagtcttactattgtcaaagtataatttgcttca 2363992  T
Q  302 ttatctttgattctttgttccacca 326  Q
    |||||||||||||||||||||||||    
T  2363993 ttatctttgattctttgttccacca 2364017  T

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Target: chr1; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 603 - 740
Target Start/End: Original strand, 2364294 - 2364431
Alignment:
Q  603 aatcttttaagaatatccagaatttcttctattcaatttttcttttattttcattaatgaaagcacaaaggtaaggttagatgaacaaattttcagattg 702  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2364294 aatcttttaagaatatccagaatttcttctattcaatttttcttttattttcattaatgaaagcacaaaggtaaggttagatgaacaaattttcagattg 2364393  T
Q  703 ggtgttcttcatttttgttcttatttatgttgtctgtg 740  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2364394 ggtgttcttcatttttgttcttatttatgttgtctgtg 2364431  T

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Target: chr1; HSP #3
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 364 - 534
Target Start/End: Original strand, 2364055 - 2364225
Alignment:
Q  364 ccttacattcttttcacgtattgtatataataatataaaggaacaannnnnnnnnnnnaatttcccaaaaccgtgtttttattttgaaattggatgccca 463  Q
    ||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||    
T  2364055 ccttacattcttttcacgtattgtatataataatataaaggaacaattttttctttttaatttcccaaaaccgtgtttttattttgaaattggatgccca 2364154  T
Q  464 aatagtagttttgcaataagattgaatatcaacttctcatttcaaacagttaaattaatcaagaaaaactg 534  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2364155 aatagtagttttgcaataagattgaatatcaacttctcatttcaaacagttaaattaatcaagaaaaactg 2364225  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 2363748 - 2363789
Alignment:
Q  197 taatttgattagtatgattgtcaaagtatgatgataatagat 238  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  2363748 taatttgattagtataattgtcaaagtatgatgataatagat 2363789  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 52071115 - 52071069
Alignment:
Q  197 taatttgattagtatgattgtcaaagtatgatgataatagatcaaat 243  Q
    ||||||||||||| |||| |||||||||||||||| |||||||||||    
T  52071115 taatttgattagtctgatagtcaaagtatgatgattatagatcaaat 52071069  T

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Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 197 - 243
Target Start/End: Original strand, 22013364 - 22013410
Alignment:
Q  197 taatttgattagtatgattgtcaaagtatgatgataatagatcaaat 243  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||    
T  22013364 taatttgattagtatgatagtcaaagtatgatgattatagatcaaat 22013410  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 21961319 - 21961364
Alignment:
Q  198 aatttgattagtatgattgtcaaagtatgatgataatagatcaaat 243  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||    
T  21961319 aatttgattagtatgatagtcaaagtatgatgattatagatcaaat 21961364  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 21961580 - 21961635
Alignment:
Q  197 taatttgattagtatgattgtcaaagtatgatgataatagatcaaatagaacaaata 253  Q
    ||||||||||||||||||  ||||||||||||||| ||||||||||| |||||||||    
T  21961580 taatttgattagtatgataatcaaagtatgatgattatagatcaaat-gaacaaata 21961635  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 197 - 252
Target Start/End: Original strand, 21960826 - 21960880
Alignment:
Q  197 taatttgattagtatgattgtcaaagtatgatgataatagatcaaatagaacaaat 252  Q
    |||||||||||||||||| |||||||||||||||| || |||||||| ||||||||    
T  21960826 taatttgattagtatgatagtcaaagtatgatgattatcgatcaaat-gaacaaat 21960880  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 243
Target Start/End: Original strand, 21960990 - 21961036
Alignment:
Q  197 taatttgattagtatgattgtcaaagtatgatgataatagatcaaat 243  Q
    |||||||||||||||||| |||||||||||||||| || ||||||||    
T  21960990 taatttgattagtatgatagtcaaagtatgatgattatcgatcaaat 21961036  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 243
Target Start/End: Original strand, 21961744 - 21961790
Alignment:
Q  197 taatttgattagtatgattgtcaaagtatgatgataatagatcaaat 243  Q
    ||||||||||||| |||| |||||||||||||||| |||||||||||    
T  21961744 taatttgattagtctgatagtcaaagtatgatgattatagatcaaat 21961790  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 243
Target Start/End: Original strand, 22011990 - 22012036
Alignment:
Q  197 taatttgattagtatgattgtcaaagtatgatgataatagatcaaat 243  Q
    |||||||||||||||||| |||||||||||||||| | |||||||||    
T  22011990 taatttgattagtatgatagtcaaagtatgatgattacagatcaaat 22012036  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 197 - 243
Target Start/End: Original strand, 21961154 - 21961200
Alignment:
Q  197 taatttgattagtatgattgtcaaagtatgatgataatagatcaaat 243  Q
    ||||||||||||||| || |||||||||||||||| ||| |||||||    
T  21961154 taatttgattagtattatagtcaaagtatgatgattatatatcaaat 21961200  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 197 - 243
Target Start/End: Original strand, 21961416 - 21961462
Alignment:
Q  197 taatttgattagtatgattgtcaaagtatgatgataatagatcaaat 243  Q
    |||||||||||||||||| |||||| | ||||||| |||||||||||    
T  21961416 taatttgattagtatgatagtcaaactgtgatgattatagatcaaat 21961462  T

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Target: scaffold0015 (Bit Score: 38; Significance: 0.000000000005; HSPs: 5)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 208418 - 208373
Alignment:
Q  198 aatttgattagtatgattgtcaaagtatgatgataatagatcaaat 243  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||    
T  208418 aatttgattagtatgatagtcaaagtatgatgattatagatcaaat 208373  T

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Target: scaffold0015; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 208157 - 208102
Alignment:
Q  197 taatttgattagtatgattgtcaaagtatgatgataatagatcaaatagaacaaata 253  Q
    ||||||||||||||||||  ||||||||||||||| ||||||||||| |||||||||    
T  208157 taatttgattagtatgataatcaaagtatgatgattatagatcaaat-gaacaaata 208102  T

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Target: scaffold0015; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 207993 - 207947
Alignment:
Q  197 taatttgattagtatgattgtcaaagtatgatgataatagatcaaat 243  Q
    ||||||||||||| |||| |||||||||||||||| |||||||||||    
T  207993 taatttgattagtctgatagtcaaagtatgatgattatagatcaaat 207947  T

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Target: scaffold0015; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 208321 - 208275
Alignment:
Q  197 taatttgattagtatgattgtcaaagtatgatgataatagatcaaat 243  Q
    |||||||||||||||||| |||||| | ||||||| |||||||||||    
T  208321 taatttgattagtatgatagtcaaactgtgatgattatagatcaaat 208275  T

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Target: scaffold0015; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 208583 - 208537
Alignment:
Q  197 taatttgattagtatgattgtcaaagtatgatgataatagatcaaat 243  Q
    ||||||||||||||| || |||||||||||||||| ||| |||||||    
T  208583 taatttgattagtattatagtcaaagtatgatgattatatatcaaat 208537  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 243
Target Start/End: Original strand, 21502889 - 21502935
Alignment:
Q  197 taatttgattagtatgattgtcaaagtatgatgataatagatcaaat 243  Q
    ||||||||||||| |||| |||||||||||||||| |||||||||||    
T  21502889 taatttgattagtctgatagtcaaagtatgatgattatagatcaaat 21502935  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 197 - 243
Target Start/End: Original strand, 21503053 - 21503099
Alignment:
Q  197 taatttgattagtatgattgtcaaagtatgatgataatagatcaaat 243  Q
    ||||||||||||| |||| ||||||||| |||||| |||||||||||    
T  21503053 taatttgattagtctgatagtcaaagtacgatgattatagatcaaat 21503099  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 50111323 - 50111276
Alignment:
Q  197 taatttgattagtatgattgtcaaagtatgatgataatagatcaaata 244  Q
    ||||||||||||| |||| |||||||||| ||||| ||||||||||||    
T  50111323 taatttgattagtttgatagtcaaagtataatgattatagatcaaata 50111276  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 50111491 - 50111445
Alignment:
Q  197 taatttgattagtatgattgtcaaagtatgatgataatagatcaaat 243  Q
    ||||||||||||| |||| || ||||||||||||| |||||||||||    
T  50111491 taatttgattagtctgatagttaaagtatgatgattatagatcaaat 50111445  T

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Target: scaffold0314 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 197 - 243
Target Start/End: Original strand, 19697 - 19743
Alignment:
Q  197 taatttgattagtatgattgtcaaagtatgatgataatagatcaaat 243  Q
    ||||||||||||| |||| |||||| ||||||||| |||||||||||    
T  19697 taatttgattagtctgatagtcaaaatatgatgattatagatcaaat 19743  T

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