View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_31 (Length: 451)
Name: NF1314_low_31
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 5299475 - 5299045
Alignment:
| Q |
1 |
tgtggaggagcagagatctcagaatttggcagcaaactagcagctttctggagcgtgcgaaatacttattggaggatttgcgttatgcgcagacttcaaa |
100 |
Q |
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|||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
5299475 |
tgtggaagagcagaaatctcagaatttggcagcaaactagcagctttctggagcgcgcgaaacacttattggaggattggcgttatgcgcagacttcaaa |
5299376 |
T |
|
| Q |
101 |
attc------tgctggtacaaggcataatagtagcaccaataacgcaacagcagactagcagaacagcagagcaaagatggcggtaaccagcaatgggga |
194 |
Q |
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|| | ||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5299375 |
atgcacacgctgctggtacaaggaataatagtagcagcaataacgcaacagcagactagcagaactgcagagcaaagatggcggtaaccagcaatgggga |
5299276 |
T |
|
| Q |
195 |
ggctaaaatgtaatattgatgcgtcattctcaacatccctcgatagagtagggataggtatgtgtatttgagatgaggaagagtgttatgtgctgtctaa |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5299275 |
ggctaaaatgtaatattgatgcgtcattctcaacatccctcgatagagtagggataggtatgtgtatttgagatgaggaagggtgttatgtgctgtctaa |
5299176 |
T |
|
| Q |
295 |
aattctatggattacacccttatgctcggtggaagttggcgaagctttgg----ggttatatcacactattgtgtggattaatgagttacaaccgcgatt |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5299175 |
aattctatggattacacccttatgctcggtggaagttggcgaagctttggggttggttatatcacactattgtgtggattaatgagttacaaccgcgatt |
5299076 |
T |
|
| Q |
391 |
ggttttacaaaaggtcacataagccaagatt |
421 |
Q |
| |
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| T |
5299075 |
ggttttacaaaaggttacataagccaagatt |
5299045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 154 - 375
Target Start/End: Original strand, 34274020 - 34274241
Alignment:
| Q |
154 |
cagaacagcagagcaaagatggcggtaaccagcaatggggaggctaaaatgtaatattgatgcgtcattctcaacatccctcgatagagtagggataggt |
253 |
Q |
| |
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|||||||||||| |||||| |||| ||| |||| ||||| |||||||| || |||||| || ||||||||||||| | |||||| ||||||| | |
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| T |
34274020 |
cagaacagcagaacaaagaaggcgaaaacgggcaagttggaggttaaaatgttatgttgatgattccttctcaacatcccgcaatagagctgggatagat |
34274119 |
T |
|
| Q |
254 |
atgtgtatttgagatgaggaagagtgttatgtgctgtctaaaattctatggattacacccttatgctcggtggaagttggcgaagctttggggttatatc |
353 |
Q |
| |
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||||||||| ||||||||||||| || ||||||||||| |||| |||| ||||||| |||||||| || ||| ||||||||||||||||||| ||||| |
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| T |
34274120 |
atgtgtattcgagatgaggaagaatggtatgtgctgtccaaaactctacggattactcccttatgttctgtgaaagttggcgaagctttgggaccatatc |
34274219 |
T |
|
| Q |
354 |
acactattgtgtggattaatga |
375 |
Q |
| |
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||||||| ||||||||||||| |
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| T |
34274220 |
acactatgttgtggattaatga |
34274241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 252 - 354
Target Start/End: Complemental strand, 8860479 - 8860377
Alignment:
| Q |
252 |
gtatgtgtatttgagatgaggaagagtgttatgtgctgtctaaaattctatggattacacccttatgctcggtggaagttggcgaagctttggggttata |
351 |
Q |
| |
|
||||||||||| |||||| ||||| |||||||||| ||||||||| ||||||| |||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
8860479 |
gtatgtgtattcgagatgtggaagggtgttatgtgttgtctaaaactctatggcttacacttttatgctacgtggaagttggcgaagctttggggttata |
8860380 |
T |
|
| Q |
352 |
tca |
354 |
Q |
| |
|
||| |
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|
| T |
8860379 |
tca |
8860377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 146 - 268
Target Start/End: Complemental strand, 8860616 - 8860495
Alignment:
| Q |
146 |
cagactagcagaacagcagagcaaagatggcggtaaccagcaatggggaggctaaaatgtaatattgatgcgtcattctcaacatccctcgatagagtag |
245 |
Q |
| |
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||||||| |||||||||||| ||||||||| | |||||||| | |||| ||| ||||||||| |||||| |||||||||||||||| || ||||||||| |
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| T |
8860616 |
cagactaacagaacagcagaacaaagatggaga-aaccagcatttgggaagcttaaatgtaatgttgatgtgtcattctcaacatccatcaatagagtag |
8860518 |
T |
|
| Q |
246 |
ggataggtatgtgtatttgagat |
268 |
Q |
| |
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||||| ||||||||||| ||||| |
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| T |
8860517 |
ggataagtatgtgtattcgagat |
8860495 |
T |
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