View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_33 (Length: 440)
Name: NF1314_low_33
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 134 - 342
Target Start/End: Complemental strand, 46152014 - 46151805
Alignment:
| Q |
134 |
taacagaaaaacatcaaaactaaataaaagcaaattcatatgttctttctccttcatcatccatt-gcttaacctgttcatcaaagcccatgagctggat |
232 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||| |
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| T |
46152014 |
taacagaaaaacatcaaaactaaataaaagcaaattcatatgttctttctccttcatcatccatttgcttaacctgttcatcaaatcccagaagctggat |
46151915 |
T |
|
| Q |
233 |
ccaaatcctatcttatatgtatcaattctaaaccattttacgacatccacataaaaagaaatttcacagagatccattccataaactattctactacttg |
332 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||| |
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| T |
46151914 |
ccaaatcctatcttatatgtatcaattctaaaccactttacgacatccacataaaaagaaatttctcacaaatccattccataaactattctactacttg |
46151815 |
T |
|
| Q |
333 |
atcaagccta |
342 |
Q |
| |
|
|||||||||| |
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|
| T |
46151814 |
atcaagccta |
46151805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 134 - 342
Target Start/End: Complemental strand, 45992101 - 45991885
Alignment:
| Q |
134 |
taacagaaaaacatcaaaactaaataaaagcaaattcatatgttctttctccttcatcatccattgcttaacctgttcatcaaagcccatgagctggatc |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45992101 |
taacagaaaaacatcaaaactaaataaaagcaaattcatatgttctttctccttcatcatccattgcttaacctgttcatcaaagcccagaagctggatc |
45992002 |
T |
|
| Q |
234 |
caaatcctatctt--------atatgtatcaattctaaaccattttacgacatccacataaaaagaaatttcacagagatccattccataaactattcta |
325 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
45992001 |
caaatcctatcttatatatatatatgtatcaattctaaaccattttacgacatccacataaaaagaaatttctcacagatccattccataaactattcta |
45991902 |
T |
|
| Q |
326 |
ctacttgatcaagccta |
342 |
Q |
| |
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||||||||||||||||| |
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| T |
45991901 |
ctacttgatcaagccta |
45991885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 248 - 328
Target Start/End: Complemental strand, 3871989 - 3871909
Alignment:
| Q |
248 |
tatgtatcaattctaaacc-attttacgacatccacataaaaagaaatttcacagagatccattccataaactattctacta |
328 |
Q |
| |
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||||||||||||| ||||| |||||||||||||||||||||| ||||||| || | ||||||||||||||||||||||||| |
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| T |
3871989 |
tatgtatcaattccaaacccattttacgacatccacataaaat-aaatttctcacaaatccattccataaactattctacta |
3871909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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