View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1314_low_34 (Length: 436)
Name: NF1314_low_34
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_34 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 6 - 407
Target Start/End: Complemental strand, 42306379 - 42305973
Alignment:
| Q |
6 |
agtagcatagggactatggggattagcggcgtgtcatgagaaacgaggcgaaataggtaaagcactaatctcttttcactcttcctttgaattcatattc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42306379 |
agtagcatagggactatggggattagcggcgtgtgatgagaaacgaggcgaaataggtaaagcactaatctcttttcactcttcctttgaattcatattc |
42306280 |
T |
|
| Q |
106 |
ttttgattcattaacatgtttttcattgaatttttgttgttataggaattgcctttgaagtcaatatcatcttgtttggaattcaagtgtcgaacttgta |
205 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42306279 |
ttttgattcattaacgtgtttttcattgaatttttgttgttataggaattgcctttgaagtcaatatcatcttgtttggaattcaagtgtcgaacttgta |
42306180 |
T |
|
| Q |
206 |
gattcatcaacaaattctaaggctcttacgtttactgcttctgcgggacatgtgtatgtctcctatcctattcttcaattttacgtcataagaatttgag |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42306179 |
gattcatcaacaaattctaaggctcttacgtttactgcttctgctggacatgtgtatgtctcctatcctattcttcaattttacgtcataataatttgag |
42306080 |
T |
|
| Q |
306 |
ataatgacataattcatatataatcacatgatgtgcactgtgaca-----tgcctttgattgaagtttttgggcaaaccctaatttcaatatatctaggt |
400 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42306079 |
ataatgacatgattcatatataatcacatgatgtgcactgtgacatgatgtgcctttgattgaagttttttggcaaaccctaatttcaatatatctaggt |
42305980 |
T |
|
| Q |
401 |
ttacctc |
407 |
Q |
| |
|
||||||| |
|
|
| T |
42305979 |
ttacctc |
42305973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University