View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_36 (Length: 434)
Name: NF1314_low_36
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 42067954 - 42067587
Alignment:
| Q |
1 |
aaaggaaattagaaaacccctcttcagaaaaaataaaatgaacacggaaatacatgggga--cctatagtccgttttatttgtcaaaatgttactcatgc |
98 |
Q |
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| T |
42067954 |
aaaggaaattagaaaacccctcttcagaaaaaataaaatgaacacggaaatacatgggggaccctatagtccgttttatttgtcaaaatgttacacatgc |
42067855 |
T |
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| Q |
99 |
atgccacatccataatcatacaaaaattttaaccttggaattacactagaacaatttccatataaaactcttagtaaaattttgttttgttttcttactc |
198 |
Q |
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| T |
42067854 |
atgccacatccataatcatacaaaaaatttaaccttggaatcacactagaacaatttccatataaaactcttagtaaaattttgttttgtttccttactc |
42067755 |
T |
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| Q |
199 |
ttccttggaaacacaacatgggaatgtacctcgattacagctcatgtctgcttgaagaatatttctctttcgttttcactaacagtcacagcctagagtg |
298 |
Q |
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| T |
42067754 |
ttccttggaaacacaacatgggaatgtacctcgattacagctcatgtctgcttgaagaatatttctctttcgttttcactaacagtcacagcctagagtg |
42067655 |
T |
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| Q |
299 |
aaagaaacaagtgatatatgaatcaatttcatgactaagttaaaaacaaaagaactatagtaaatata |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42067654 |
aaagaaacaagtgatatatgaatcaatttcatgactaagttaaaaacaaaagaactatagtaaatata |
42067587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 315
Target Start/End: Complemental strand, 24871319 - 24871265
Alignment:
| Q |
261 |
ttctctttcgttttcactaacagtcacagcctagagtgaaagaaacaagtgatat |
315 |
Q |
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| T |
24871319 |
ttctctttcattttcactcacaatcacagcctagcttgaaagaaactagtgatat |
24871265 |
T |
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