View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_38 (Length: 432)
Name: NF1314_low_38
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 34 - 420
Target Start/End: Original strand, 34866444 - 34866830
Alignment:
| Q |
34 |
tttgaagaaatctcccttaaagctagctgtcaagaaggaagaacctaacaactcaaatactacccgatgctagacttaggccctcccaaaatacccaagt |
133 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34866444 |
tttggagaaatctcccttaaagctagctgtcaagaaggaagaacctaacaactcaaatactacccgatgctagacttaggccctcccaaaatacccaagt |
34866543 |
T |
|
| Q |
134 |
tcctgtcaatattttacttatttacttgcattaataaataagccacctataaattgaattaagggagtgtttggaagagcttatttacaacttatttgaa |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34866544 |
tcctgtcaatattttacttatttacttgcattaataaataagccacctataaattgaattaagggagtgtttggaagagcttatttacaacttatttgaa |
34866643 |
T |
|
| Q |
234 |
tttacctgatgacataagcccttgtcgaagtgttcagaacatgacagaacttataaaaatagcttataacatgtttaaaagctgtcttaaaatttggatt |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34866644 |
tttacctgatgacataagcccttgtcgaagtgttcagaacatgacagaacttataaaaatagcttataacatgtttaaaagctgtcttaaaatttggatt |
34866743 |
T |
|
| Q |
334 |
ggctctaactcaaccctacaaaatcagttagtaatgtgaaggatatccacccccttataagctctactctgaccatattaatatatt |
420 |
Q |
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| T |
34866744 |
ggctctaactcaaccctacaaaatcagttagtaatgtgaaggatatccacccccttataagctctactctgaccatattaatatatt |
34866830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 115 - 419
Target Start/End: Complemental strand, 51857530 - 51857227
Alignment:
| Q |
115 |
cctcccaaaatacccaagttcctgtcaatattttacttatttacttgcattaataaataagccacctataaattgaattaagggagtgtttggaagagct |
214 |
Q |
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||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||| ||||||| | ||||||||||||||||||||| || |
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| T |
51857530 |
cctcccaaaatacccaagtccctgtcaatattttactcatctacttgcattaataaataagccacatataaatagtattaagggagtgtttggaagatct |
51857431 |
T |
|
| Q |
215 |
tatttacaacttatttgaatttacctgatgacataagcccttgtcgaagtgttcagaacatgacagaacttataaaaatagcttataacatgtttaaaag |
314 |
Q |
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|| | ||||||| |||||||||||||||||||| | |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51857430 |
tactaacaacttttttgaatttacctgatgacacatgcccctgtcgaagtgtttggaacatgacagaacttataaaaatagcttataacatgtttaaaag |
51857331 |
T |
|
| Q |
315 |
ctgtcttaaaatttggattggctctaactcaaccctacaaaatcagttagtaatgtgaaggatatccacccccttataagctctactctgaccatattaa |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||| ||| |||| ||||| ||||| || |||||||| |
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| T |
51857330 |
ctgtcttaaaatttggattggctctaactcaaccctacaaaatcaatttgtaaagtgaaggatatcgaccaccttctaagc-ctactttggccatattac |
51857232 |
T |
|
| Q |
415 |
tatat |
419 |
Q |
| |
|
||||| |
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|
| T |
51857231 |
tatat |
51857227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 51857638 - 51857575
Alignment:
| Q |
34 |
tttgaagaaatctc--ccttaaagctagctgtcaagaaggaagaacctaacaactcaaatacta |
95 |
Q |
| |
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|||| ||||||||| ||| ||||||||||||||||||||||||||| | | ||| |||||||| |
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| T |
51857638 |
tttggagaaatctctgcctaaaagctagctgtcaagaaggaagaaccaagccacttaaatacta |
51857575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 11171478 - 11171515
Alignment:
| Q |
200 |
gtgtttggaagagcttatttacaacttatttgaattta |
237 |
Q |
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||||||||||||| |||||||||||||||||||||||| |
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| T |
11171478 |
gtgtttggaagagtttatttacaacttatttgaattta |
11171515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 380
Target Start/End: Original strand, 37579900 - 37579956
Alignment:
| Q |
324 |
aatttggattggctctaactcaaccctacaaaatcagttagtaatgtgaaggatatc |
380 |
Q |
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||||| |||| | |||||||||||||||||||||||| | |||| ||||| |||||| |
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| T |
37579900 |
aatttagatttggtctaactcaaccctacaaaatcagcttgtaaggtgaaagatatc |
37579956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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