View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_39 (Length: 428)
Name: NF1314_low_39
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_39 |
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| [»] scaffold0595 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 30 - 418
Target Start/End: Original strand, 8328025 - 8328414
Alignment:
| Q |
30 |
ataagtgtagacgaaaaggatgagactgaaatgagaaatgcaaaggaacacgataggatggcattacataggaagctgtaaaaagttgacatgtgaaaca |
129 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8328025 |
ataagtgtagaggaaaaggatgagactgaaatgagaaatgcaaaggaacacgataggatggcattacataggaagctgtaaaaagttgacatgtgaaaca |
8328124 |
T |
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| Q |
130 |
aacaagttacctcggaacatgaaatctttctttgtaaagacataaacttacgcacgaggaacactaatcatatgcacttctcctttgtgtttctttcttg |
229 |
Q |
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| T |
8328125 |
aaaaagttacctcggaacatgaaatctttctttgtaaagacacaaacttacgcacgaggaacactaatcatatgcacttctcctttgtgtttctttcttg |
8328224 |
T |
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| Q |
230 |
tttgaggacttgctatctgctcccgaacttgaggaactctcgtaaccatgatattttttgtctttaataatgatatggatatggattatttcctcatgtt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8328225 |
tttgaggacttgctatctgctcccgaacttgaggaactcttgtaaccatgatattttttgtctttaataatgatatggatatggattatttcctcatgtt |
8328324 |
T |
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| Q |
330 |
atgtttggctagccaaaccttg-tccctcccatctattcgtgcatctcatttacgtaggaatttgcaagattctgagttttgcgcctttg |
418 |
Q |
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| T |
8328325 |
atgtttggctagccaaacattgatccctcccatctattcgtgcatctcatttacgtaggaatttgcaagattctgagttttgcgcctttg |
8328414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0595 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: scaffold0595
Description:
Target: scaffold0595; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 30 - 418
Target Start/End: Complemental strand, 2009 - 1618
Alignment:
| Q |
30 |
ataagtgtagacgaaaaggatgagactgaaatgagaaatgcaaaggaacacgataggatggcattacataggaagctgtaaaaagttgacatgtgaaaca |
129 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2009 |
ataagtgtagaggaaaaggatgagactgaaatgagaaatgcaaaggaacacgataggatggcattacataggaagctgtaaaaagttgacatgtgaaaca |
1910 |
T |
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| Q |
130 |
aacaagttacctcggaacatgaaatctttctttgtaaagacataaacttacgcacgaggaacactaatcatatgcacttctcctttgtgtttctttcttg |
229 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1909 |
aaaaagttacctcggaacatgaaatctttctttgtaaagacacaaacttacgcacgaggaacactaatcatatgcacttctcctttgtgtttctttcttg |
1810 |
T |
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| Q |
230 |
tttgaggacttgctatctgctcccgaacttgaggaactctcgtaaccatgat--attttttgtctttaataatgatatggatatggattatttcctcatg |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1809 |
tttgaggacttgctatctgctcccgaacttgaggaactcttgtaaccatgattatttttttgtctttaataatgatatggatatggattatttcctcatg |
1710 |
T |
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| Q |
328 |
ttatgtttggctagccaaaccttg-tccctcccatctattcgtgcatctcatttacgtaggaatttgcaagattctgagttttgcgcctttg |
418 |
Q |
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|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1709 |
ttatgtttggctagccaaacattgatccctcccatctattcgtgcatctcatttacgtaggaatttgcaagattctgagttttgcgcctttg |
1618 |
T |
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