View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1314_low_4 (Length: 666)

Name: NF1314_low_4
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1314_low_4
NF1314_low_4
[»] chr5 (6 HSPs)
chr5 (82-638)||(38295738-38296313)
chr5 (514-638)||(38303026-38303142)
chr5 (237-360)||(38303226-38303352)
chr5 (520-574)||(38307293-38307349)
chr5 (82-143)||(35943882-35943943)
chr5 (172-221)||(38303333-38303382)
[»] chr2 (1 HSPs)
chr2 (82-160)||(17819994-17820072)
[»] chr6 (1 HSPs)
chr6 (82-143)||(12732531-12732592)
[»] chr7 (1 HSPs)
chr7 (91-173)||(27744308-27744392)
[»] chr3 (2 HSPs)
chr3 (82-155)||(1758446-1758519)
chr3 (91-160)||(49607446-49607515)
[»] chr1 (1 HSPs)
chr1 (81-152)||(44454019-44454090)
[»] chr4 (1 HSPs)
chr4 (99-160)||(50526178-50526239)


Alignment Details
Target: chr5 (Bit Score: 421; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 82 - 638
Target Start/End: Complemental strand, 38296313 - 38295738
Alignment:
Q  82 gagatgaatgagaaaatgtgcttgtgttgaatccacgtagccacgtgtctgatttttgtgtgtgtatcaaggggtgtat--------------------g 161  Q
    ||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||| |||| ||| |||||||                    |    
T  38296313 gagatgaatgagaaagtgtgcttgtgttggatccacgtagctacgtgtctgatttttgtgtgggtattaagaggtgtattgacacctaagatagtctatg 38296214  T
Q  162 tataataactctttctttttaggcagctaaatatgaaaacaatttcatagtaaaagaaattttctttttgaaggaaatttcaccgtaaaagaataaaatt 261  Q
    ||| |||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38296213 tatcataactctttctttttaggcagctaaatatgaaaacaatttg---gtaaaagaaattttctttttgaaggaaatttcaccgtaaaagaataaaatt 38296117  T
Q  262 aagaaaagaatttcaatgttttttcctccatgttcatgaatgtgacgaattattccaaatgggaacaaaaaagcacttcaattaaa--tatttaatatct 359  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  38296116 aagaaaagaatatcaatgttttttcctccatgttcatgaatgtgacgaattattccaaatgggaacaaaaaagcacttcaattaaaaatatttaatatct 38296017  T
Q  360 tannnnnnnnggaagaaatatttaatatcttattattttagatgatttttacacagactttctgaatacctaacattcaattcgtaagacttattatttt 459  Q
    ||        ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38296016 tattttttttggaagaaatatttaatatcttattattttagatgattttgacacagactttctgaatacctaacattcaattcgtaagacttattatttt 38295917  T
Q  460 caatagccattaagggaaaaggaaactgaagaatatataattaattttccaagcatatataagtgagaaggttgttcataatgtcactactcactcgaca 559  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  38295916 caatagccattaagggaaaaggaaactgaagaatatataattaattttccaagcatatataagtgagaaggttgttcataatgtcactactcactcgata 38295817  T
Q  560 caaatcaactataatatggttaattatatatcttctcgaccaatgatttttcaattgatcatattcattagttgttgtt 638  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38295816 caaatcaactataatatggttaattatatatcttctcgaccaatgatttttcaattgatcatattcattagttgttgtt 38295738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 514 - 638
Target Start/End: Complemental strand, 38303142 - 38303026
Alignment:
Q  514 atatataagtgagaaggttgttcataatgtcactactcactcgacacaaatcaactataatatggttaattatatatcttctcgaccaatgatttttcaa 613  Q
    |||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||| ||||        |||||  ||||||||||||||| ||     
T  38303142 atatataagtgaaaaggttgatcataatgtcactactcactccacacaaatcaactataatttggt--------tatctcttcgaccaatgattttccat 38303051  T
Q  614 ttgatcatattcattagttgttgtt 638  Q
    ||||||||||||||| ||| |||||    
T  38303050 ttgatcatattcattggttattgtt 38303026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 237 - 360
Target Start/End: Complemental strand, 38303352 - 38303226
Alignment:
Q  237 aatttcaccgtaaaagaa-taaaattaagaaaagaatttcaatgttttttcctccatgttcatgaatgtgacgaattattccaaatggga-acaaaaaag 334  Q
    |||||||| ||||||||| |||||||||||||| ||||| | || |||||||||||||||||||||  |   |||||||||||||||| | | ||||||     
T  38303352 aatttcacagtaaaagaaataaaattaagaaaacaattttagtgatttttcctccatgttcatgaacctcttgaattattccaaatggtagaaaaaaaat 38303253  T
Q  335 cacttcaatt-aaatatttaatatctt 360  Q
     || |||||| ||||||||||||||||    
T  38303252 tacatcaattaaaatatttaatatctt 38303226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 520 - 574
Target Start/End: Complemental strand, 38307349 - 38307293
Alignment:
Q  520 aagtgagaaggttgttcataatgtcact--actcactcgacacaaatcaactataat 574  Q
    |||||| ||||||||||||||||||||   |||||||| ||||||||||||||||||    
T  38307349 aagtgaaaaggttgttcataatgtcacacaactcactcaacacaaatcaactataat 38307293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 35943882 - 35943943
Alignment:
Q  82 gagatgaatgagaaaatgtgcttgtgttgaatccacgtagccacgtgtctgatttttgtgtg 143  Q
    |||| ||| |||||| ||||||||||| | ||||||||| | ||||||| ||||||||||||    
T  35943882 gagaggaaagagaaagtgtgcttgtgtgggatccacgtaactacgtgtcagatttttgtgtg 35943943  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 38303382 - 38303333
Alignment:
Q  172 ctttctttttaggcagctaaatatgaaaacaatttcatagtaaaagaaat 221  Q
    ||||||||||||||   |||||| ||||||||||||| ||||||||||||    
T  38303382 ctttctttttaggcttataaataagaaaacaatttcacagtaaaagaaat 38303333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 160
Target Start/End: Original strand, 17819994 - 17820072
Alignment:
Q  82 gagatgaatgagaaaatgtgcttgtgttgaatccacgtagccacgtgtctgatttttgtgtgtgtatcaaggggtgtat 160  Q
    |||||||| ||||||||||| |||||| |  |||||||| |||| |||| |||||||||||| || |||||||||||||    
T  17819994 gagatgaaagagaaaatgtgtttgtgtggggtccacgtaaccacatgtcagatttttgtgtgggtgtcaaggggtgtat 17820072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 82 - 143
Target Start/End: Complemental strand, 12732592 - 12732531
Alignment:
Q  82 gagatgaatgagaaaatgtgcttgtgttgaatccacgtagccacgtgtctgatttttgtgtg 143  Q
    |||||||| |||||||||||||| ||| | |||||| |||||||||||| ||||||||||||    
T  12732592 gagatgaaagagaaaatgtgcttatgtgggatccacatagccacgtgtcagatttttgtgtg 12732531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 173
Target Start/End: Original strand, 27744308 - 27744392
Alignment:
Q  91 gagaaaatgtgcttgtgttgaatccacgtagccacgtgtctgatttttgtgtgtgtatcaaggggtg--tatgtataataactct 173  Q
    |||||||||||||| ||  | |||||||| ||||| |||| |||||||||||| ||||||| |||||  ||||||| ||||||||    
T  27744308 gagaaaatgtgcttatgagggatccacgtggccacatgtcagatttttgtgtgggtatcaaagggtgtctatgtatcataactct 27744392  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 155
Target Start/End: Original strand, 1758446 - 1758519
Alignment:
Q  82 gagatgaatgagaaaatgtgcttgtgttgaatccacgtagccacgtgtctgatttttgtgtgtgtatcaagggg 155  Q
    |||||||| ||||||||||| |||||| || |||||||| |||  |||| |||||||||||| || ||||||||    
T  1758446 gagatgaaagagaaaatgtgtttgtgtggagtccacgtaaccatatgtcagatttttgtgtgggtgtcaagggg 1758519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 160
Target Start/End: Complemental strand, 49607515 - 49607446
Alignment:
Q  91 gagaaaatgtgcttgtgttgaatccacgtagccacgtgtctgatttttgtgtgtgtatcaaggggtgtat 160  Q
    |||||| ||||||||||| | ||||||||  | ||||||| |||||||||||| || |||| ||||||||    
T  49607515 gagaaagtgtgcttgtgtgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtat 49607446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 152
Target Start/End: Complemental strand, 44454090 - 44454019
Alignment:
Q  81 tgagatgaatgagaaaatgtgcttgtgttgaatccacgtagccacgtgtctgatttttgtgtgtgtatcaag 152  Q
    ||||| ||| || ||| ||||||||||| | ||||||||| |||| |||| |||||||||||| ||||||||    
T  44454090 tgagaggaaagaaaaagtgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtgtgggtatcaag 44454019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 50526178 - 50526239
Alignment:
Q  99 gtgcttgtgttgaatccacgtagccacgtgtctgatttttgtgtgtgtatcaaggggtgtat 160  Q
    |||||||||  ||||||||||  ||||||||| |||||||||||| || |||| ||||||||    
T  50526178 gtgcttgtgcggaatccacgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtat 50526239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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