View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_40 (Length: 426)
Name: NF1314_low_40
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_40 |
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| [»] scaffold0234 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 30 - 373
Target Start/End: Original strand, 12699598 - 12699942
Alignment:
| Q |
30 |
gccaaagcttaaggttactctgtttccgaaggcttcaaagagtggaagcaaagctttgggaattttcgctctatagctcatgtaaaagatgaaacactac |
129 |
Q |
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| T |
12699598 |
gccaaagcttaaggttactgtgtttccaaaggcttcaaagagtggaagcaaggctttgggaattttcgctctatagctcatgtaaaagatgaaacactac |
12699697 |
T |
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| Q |
130 |
tagaaaatttacatttgacatcagggcattcacatcagtggagaaatacttgaagggaaagaactttggagaaggttttcacatcagctgaggaaatgcc |
229 |
Q |
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| T |
12699698 |
tagaaaatttacatttgacatcagggctttcacatcagtggagaaatacttgaagggaaagaactttggagaaggttttcacaccagctgaggaaatgcc |
12699797 |
T |
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| Q |
230 |
taagaggaataatagatactaaatagttttcacatctgtggaact-aatgactgagggaaaagataaacgcgatgacaatttcgtaatattagtgctctt |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12699798 |
taagaggaataatagatactaaatagttttcacatctgtggaactaaatgactgagggaaaagataaacgcggtgacaatttcgtaatattagtgctctt |
12699897 |
T |
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| Q |
329 |
tacaacaaacattgttcacatcagtgaatacagtcagccgaaggg |
373 |
Q |
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| T |
12699898 |
tacaacaaacattgttcacatcagtgaatacagtcagccgaaggg |
12699942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 290
Target Start/End: Complemental strand, 2598768 - 2598668
Alignment:
| Q |
190 |
gaactttggagaaggttttcacatcagctgaggaaatgcctaagaggaataatagatactaaatagttttcacatctgtggaactaatgactgagggaaa |
289 |
Q |
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| T |
2598768 |
gaactttgatgaagttgttcccatcagttgaggaaatgactgaagggaaaaataaatgctaaagagttttgacatcagtggaactaatgcatgagggaaa |
2598669 |
T |
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| Q |
290 |
a |
290 |
Q |
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| T |
2598668 |
a |
2598668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 51741416 - 51741484
Alignment:
| Q |
123 |
acactactagaaaatttacatttgacatcagggcattcacatcagtggagaaatacttgaagggaaaga |
191 |
Q |
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| T |
51741416 |
acactactagaaaaaagacatttgacatcagggttttcacatcagtgcaaaaatacatgagggtaaaga |
51741484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0234 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0234
Description:
Target: scaffold0234; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 173 - 322
Target Start/End: Original strand, 5049 - 5199
Alignment:
| Q |
173 |
aaatacttgaagggaaaga-actttggagaaggttttcacatcagctgaggaaatgcctaagaggaataatagatactaaatagttttcacatctgtgga |
271 |
Q |
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|||||| ||| |||||||| |||||||| |||||||||| |||| ||| |||||| || || |||| | |||| | || |||||| ||||| ||||| |
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| T |
5049 |
aaatacctgatgggaaagatactttggatgaggttttcacttcaggtgaagaaatggctgaggggaaaagtagaagcccaagagttttgacatcagtgga |
5148 |
T |
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| Q |
272 |
actaatgactgagggaaaagataaacgcgatgacaatttcgtaatattagt |
322 |
Q |
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| T |
5149 |
actaatgcatgaggggaaacataaacgcggtggcaattttgtaatattagt |
5199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 24167159 - 24167224
Alignment:
| Q |
124 |
cactactagaaaatttacatttgacatcagggcattcacatcagtggagaaatacttgaagggaaa |
189 |
Q |
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| T |
24167159 |
cactactagaaaatatacatttaacaatagggatttcacatcagtggagaaatacatgaggggaaa |
24167224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 322
Target Start/End: Complemental strand, 9809556 - 9809427
Alignment:
| Q |
193 |
ctttggagaaggttttcacatcagctgaggaaatgcctaagaggaataatagatactaaatagttttcacatctgtggaactaatgactgagggaaaaga |
292 |
Q |
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||||||| |||||||| || |||| ||| |||||| || || |||| |||||| | | |||||| |||| |||||||||||| |||||| ||| | |
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| T |
9809556 |
ctttggacaaggttttgacttcaggtgaagaaatggctgaggggaaaaatagaagcccaggagttttgacataagtggaactaatgcatgaggggaaaca |
9809457 |
T |
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| Q |
293 |
taaacgcgatgacaatttcgtaatattagt |
322 |
Q |
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| T |
9809456 |
taaacgcggtggcaatttcgtaatattagt |
9809427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 31713445 - 31713489
Alignment:
| Q |
124 |
cactactagaaaatttacatttgacatcagggcattcacatcagt |
168 |
Q |
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| T |
31713445 |
cactactagaaaatatacatttgacatcagggttttcacatcagt |
31713489 |
T |
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