View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_43 (Length: 423)
Name: NF1314_low_43
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_43 |
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| [»] scaffold0038 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 7 - 401
Target Start/End: Original strand, 28179746 - 28180146
Alignment:
| Q |
7 |
gtgagatgaaaatgtgttacaaaagttgtagtcaaaatgaagcatgatagtggtatgtgacaggatgttctcaggaatttattcattgtaactattgttc |
106 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28179746 |
gtgatatgaaaatgtgttacaaaaattgtagtcaaaatgaagcatgatagtggtatgtgacaggatgttctcaggaatttattcattgtaattattgttc |
28179845 |
T |
|
| Q |
107 |
ataggtaatgaaat----------tttaaatgtttgaaagccttgaattttagtaacttttatgcttttaaagagtgtttgatgttaggcattcagcgaa |
196 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28179846 |
ataggtaatgaaatatgtagaagctttaaatgtttgaaagccttgaatttta---acttttatgcttttaaagagtgtttgatgttaggcattcagcgaa |
28179942 |
T |
|
| Q |
197 |
catttgataacttggcttgtagaattgatgaaataaagctgaattagttggataaaaaccaattttgttatgttttcaatgaaatcaggtagatttttat |
296 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28179943 |
catttgataacttggcttgtagaattgatgaa-taaagctgaattagttggataaaaaccaattttgttatgttttcaatgaaatcaggtagatttttat |
28180041 |
T |
|
| Q |
297 |
aaaggctttacatgagtatttgagtttgaataattcaatcattaaatatatgtttattgttgtgaagtttcctttgtttaagaggcctaatactgagcaa |
396 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28180042 |
aaaggttttacatgagtatttgagtttgaataattcaatcattaaatatgtgtttattgttgtgaagtttcctttgtttaagaggcctaatactgagcaa |
28180141 |
T |
|
| Q |
397 |
agatg |
401 |
Q |
| |
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||||| |
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| T |
28180142 |
agatg |
28180146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 121 - 298
Target Start/End: Original strand, 28156185 - 28156358
Alignment:
| Q |
121 |
tttaaatgtttgaaagccttgaattttagtaacttttatgcttttaaagagtgtttgatgttaggcattcagcgaacatttgataacttggcttgtagaa |
220 |
Q |
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|||||||||| ||||||||| ||||||| | || ||||||||||||||| ||||||||||||||||| ||| ||| |||||||| | ||||||||||| |
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| T |
28156185 |
tttaaatgttcgaaagccttaaattttaatt--ttgtatgcttttaaagagcgtttgatgttaggcatttagcaaacgtttgataaatgggcttgtagaa |
28156282 |
T |
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| Q |
221 |
ttgatgaaataaagctgaattagttggataaaaaccaattttgttatgttttcaatgaaatcaggtagatttttataa |
298 |
Q |
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| T |
28156283 |
ta-atgaa-tcaagttgcattagttggataaaaaccaactttcgtatgttttcaatgaaatcatgtagatttttataa |
28156358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 121 - 226
Target Start/End: Original strand, 28224513 - 28224616
Alignment:
| Q |
121 |
tttaaatgtttgaaagccttgaattttagtaacttttatgcttttaaagagtgtttgatgttaggcattcagcgaacatttgataacttggcttgtagaa |
220 |
Q |
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|||||||||||||||||||| ||||||| | || ||||||||||||||||||||||||||||| ||| ||| ||| || ||||| ||||||||||||| |
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| T |
28224513 |
tttaaatgtttgaaagccttaaattttaatt--ttgtatgcttttaaagagtgtttgatgttaggtatttagcaaacgttcgataatttggcttgtagaa |
28224610 |
T |
|
| Q |
221 |
ttgatg |
226 |
Q |
| |
|
|||||| |
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| T |
28224611 |
ttgatg |
28224616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 388
Target Start/End: Original strand, 28156520 - 28156583
Alignment:
| Q |
325 |
aataattcaatcattaaatatatgtttattgttgtgaagtttcctttgtttaagaggcctaata |
388 |
Q |
| |
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| T |
28156520 |
aataattcaatcattcaatctgtctttattgttgtgaagtttcctctgttttagaggcataata |
28156583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 387
Target Start/End: Original strand, 28240973 - 28241047
Alignment:
| Q |
313 |
tatttgagtttgaataattcaatcattaaatatatgtttattgttgtgaagtttcctttgtttaagaggcctaat |
387 |
Q |
| |
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||||||| ||||||||||| ||||||| ||| | ||||||||||||| |||||| | ||||| ||||||||||| |
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| T |
28240973 |
tatttgaatttgaataatttaatcattcaatctgtgtttattgttgtaaagtttaatctgttttagaggcctaat |
28241047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 28224619 - 28224671
Alignment:
| Q |
249 |
taaaaaccaattttgttatgttttcaatgaaatcaggtagatttttataaagg |
301 |
Q |
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||||||||||||||| |||||||||||| ||||| |||||||| |||||||| |
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| T |
28224619 |
taaaaaccaattttggtatgttttcaataaaatcttgtagatttctataaagg |
28224671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 354
Target Start/End: Original strand, 28224858 - 28224898
Alignment:
| Q |
314 |
atttgagtttgaataattcaatcattaaatatatgtttatt |
354 |
Q |
| |
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|||||||||||||||||||||||||| ||| | |||||||| |
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| T |
28224858 |
atttgagtttgaataattcaatcattcaatctgtgtttatt |
28224898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 121 - 226
Target Start/End: Original strand, 25011 - 25114
Alignment:
| Q |
121 |
tttaaatgtttgaaagccttgaattttagtaacttttatgcttttaaagagtgtttgatgttaggcattcagcgaacatttgataacttggcttgtagaa |
220 |
Q |
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|||||||||||||||||||| ||||||| | || ||||||||||||||||||||||||||||| ||| ||| ||| || ||||| ||||||||||||| |
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| T |
25011 |
tttaaatgtttgaaagccttaaattttaatt--ttgtatgcttttaaagagtgtttgatgttaggtatttagcaaacgttcgataatttggcttgtagaa |
25108 |
T |
|
| Q |
221 |
ttgatg |
226 |
Q |
| |
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|||||| |
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| T |
25109 |
ttgatg |
25114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 387
Target Start/End: Original strand, 41135 - 41209
Alignment:
| Q |
313 |
tatttgagtttgaataattcaatcattaaatatatgtttattgttgtgaagtttcctttgtttaagaggcctaat |
387 |
Q |
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||||||| ||||||||||| ||||||| ||| | ||||||||||||| |||||| | ||||| ||||||||||| |
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| T |
41135 |
tatttgaatttgaataatttaatcattcaatctgtgtttattgttgtaaagtttaatctgttttagaggcctaat |
41209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 25117 - 25169
Alignment:
| Q |
249 |
taaaaaccaattttgttatgttttcaatgaaatcaggtagatttttataaagg |
301 |
Q |
| |
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||||||||||||||| |||||||||||| ||||| |||||||| |||||||| |
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| T |
25117 |
taaaaaccaattttggtatgttttcaataaaatcttgtagatttctataaagg |
25169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 354
Target Start/End: Original strand, 25356 - 25396
Alignment:
| Q |
314 |
atttgagtttgaataattcaatcattaaatatatgtttatt |
354 |
Q |
| |
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|||||||||||||||||||||||||| ||| | |||||||| |
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| T |
25356 |
atttgagtttgaataattcaatcattcaatctgtgtttatt |
25396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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