View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1314_low_44 (Length: 422)
Name: NF1314_low_44
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_44 |
 | |
|
| [»] scaffold0045 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 25793304 - 25793710
Alignment:
| Q |
1 |
tttagggttgtgtttatattgttgaagcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgcttctagttgaagc |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25793304 |
tttagggctgtgtttatattgttgaagcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgcttctagttgaagc |
25793403 |
T |
|
| Q |
101 |
aattggtaaatttatcatttttcatacataatctgaccactaggaacnnnnnnntattatagagtttcttgaaacggccgaaaatttagtaacttgcagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
25793404 |
aattggtaaatttatcatttttcatacataatctgaccactaggaacaaaaaaatattaaagagtttcttgaaatggccgaaaatttagtaacttgcagt |
25793503 |
T |
|
| Q |
201 |
ccttcaaaatcatgatacggagggagtataatgcttaaatttttgtcccattttctgataatagtttactgcttccatttagtctttcttgaattcaata |
300 |
Q |
| |
|
||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25793504 |
ccttccaaatcatgagatggagggagtataatgcttaaatttttgtcccattttctgataatagtttactgcttccatttagtctttcttgaattcaata |
25793603 |
T |
|
| Q |
301 |
aaatgtatgaatctttctgctgcagatgtttatcttgctggtactgttatgttgatttttggcatgggcttatatggattgttcatcagcaacacacctg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25793604 |
aaatgtatgaatctttctgctgcagatgtttatcttgctggtactgttatgttgatttttggcatgggcttatatggattgttcatcagcaacacacctc |
25793703 |
T |
|
| Q |
401 |
atgatgt |
407 |
Q |
| |
|
||||||| |
|
|
| T |
25793704 |
atgatgt |
25793710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 295 - 405
Target Start/End: Complemental strand, 10378055 - 10377945
Alignment:
| Q |
295 |
tcaataaaatgtatgaatctttctgctgcagatgtttatcttgctggtactgttatgttgatttttggcatgggcttatatggattgttcatcagcaaca |
394 |
Q |
| |
|
|||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
10378055 |
tcaataaaataaatgaatcctattgctgcagatgtttatcttgctggtactgttatgttgatttttggtttgggcttatatggattgttcattagcaaca |
10377956 |
T |
|
| Q |
395 |
cacctgatgat |
405 |
Q |
| |
|
||||| ||||| |
|
|
| T |
10377955 |
cacctcatgat |
10377945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 296 - 404
Target Start/End: Original strand, 10075174 - 10075282
Alignment:
| Q |
296 |
caataaaatgtatgaatctttctgctgcagatgtttatcttgctggtactgttatgttgatttttggcatgggcttatatggattgttcatcagcaacac |
395 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||| |
|
|
| T |
10075174 |
caataaaataaatgaatcttgctgctgcagatgtttatcttgctggtactgttatgttgatttttataatgggtttatatggattgtttatcagcaacat |
10075273 |
T |
|
| Q |
396 |
acctgatga |
404 |
Q |
| |
|
|||| |||| |
|
|
| T |
10075274 |
acctcatga |
10075282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 10365866 - 10365757
Alignment:
| Q |
1 |
tttagggttgtgtttatattgttgaagcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgcttctagttgaagc |
100 |
Q |
| |
|
|||||||||| ||||||||||| || ||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||| | || |||||||| |
|
|
| T |
10365866 |
tttagggttgcgtttatattgtcgatgcatacaaagtttattggtcaagttgtgtcaaaggagttcacaccggaaagatggttctacgcctggttgaagc |
10365767 |
T |
|
| Q |
101 |
aattggtaaa |
110 |
Q |
| |
|
| |||||||| |
|
|
| T |
10365766 |
agttggtaaa |
10365757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 10136450 - 10136539
Alignment:
| Q |
20 |
tgttgaagcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgcttctagttgaagcaattggtaa |
109 |
Q |
| |
|
|||| |||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||| | || ||||||||||||||||| |
|
|
| T |
10136450 |
tgtttaagcatacaaagtctattggtcaagctgtgtcaaaggagttcacaccggaaagatggttctacgcctggttgaagcaattggtaa |
10136539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 296 - 393
Target Start/End: Original strand, 10136729 - 10136826
Alignment:
| Q |
296 |
caataaaatgtatgaatctttctgctgcagatgtttatcttgctggtactgttatgttgatttttggcatgggcttatatggattgttcatcagcaac |
393 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| | ||||||||||||| |||| |||| |
|
|
| T |
10136729 |
caataaaataaatgaatcttgctgctgcagatgtttatcttgctggtaccgttatgttgatttttggaatgcgtatatatggattgtttatcaccaac |
10136826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 10212912 - 10213001
Alignment:
| Q |
20 |
tgttgaagcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgcttctagttgaagcaattggtaa |
109 |
Q |
| |
|
|||| |||||||||||||||||||| |||| |||||||||||||||||| | |||||||||||||||| ||| || |||||||||||||| |
|
|
| T |
10212912 |
tgtttaagcatacaaagtctattggtcaagctgtgtcaaaggagttcactccggaaagatggttctgcctctggtcgaagcaattggtaa |
10213001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 319 - 376
Target Start/End: Complemental strand, 10365559 - 10365502
Alignment:
| Q |
319 |
gctgcagatgtttatcttgctggtactgttatgttgatttttggcatgggcttatatg |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10365559 |
gctgcagatgtttatcttgctggtactgttatgttgatttttggtatgggcttatatg |
10365502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 10378313 - 10378208
Alignment:
| Q |
1 |
tttagggttgtgtttatattgttgaagcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgcttctagttgaagc |
100 |
Q |
| |
|
|||||||||| ||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||| | |||||||||||||| | | |||||||| |
|
|
| T |
10378313 |
tttagggttgcgtttatattgtcgatacatacaaagtctattggtcaagtggtgtcaaaggagttcacgccggaaagatggttctacacttggttgaagc |
10378214 |
T |
|
| Q |
101 |
aattgg |
106 |
Q |
| |
|
|||||| |
|
|
| T |
10378213 |
aattgg |
10378208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 296 - 404
Target Start/End: Original strand, 10134094 - 10134202
Alignment:
| Q |
296 |
caataaaatgtatgaatctttctgctgcagatgtttatcttgctggtactgttatgttgatttttggcatgggcttatatggattgttcatcagcaacac |
395 |
Q |
| |
|
||||||||| |||| |||| ||||||||||||||||||||||||||| ||||||||||||| || ||| ||| ||||||||||| ||||||||||| |
|
|
| T |
10134094 |
caataaaataaatgagtcttgttgctgcagatgtttatcttgctggtaccattatgttgattttcggaatgttcttttatggattgtttatcagcaacac |
10134193 |
T |
|
| Q |
396 |
acctgatga |
404 |
Q |
| |
|
|||| |||| |
|
|
| T |
10134194 |
acctcatga |
10134202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 109
Target Start/End: Original strand, 10133835 - 10133918
Alignment:
| Q |
26 |
agcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgcttctagttgaagcaattggtaa |
109 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||||| ||||| |||||| ||| ||| || |||||||||||||| |
|
|
| T |
10133835 |
agcatacaaagtctattggtcaagctgtgtcaaaggagttcacaccggaaatatggttttgcgtctggtcgaagcaattggtaa |
10133918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 10101994 - 10102078
Alignment:
| Q |
25 |
aagcatacaaagtctattggacaagttgtgtcaaaggagttcacactggaaagatggttctgcttctagttgaagcaattggtaa |
109 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||| | |||||||||||||||| || || || ||||||||||| |
|
|
| T |
10101994 |
aagcatacaaagtctattggtcaagctgtgtcaaaggagttcactccggaaagatggttctgcctcaggtcgacgcaattggtaa |
10102078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 10075062 - 10075098
Alignment:
| Q |
51 |
tgtgtcaaaggagttcacactggaaagatggttctgc |
87 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10075062 |
tgtgtcaaaggagttcacactggaaatatggttctgc |
10075098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 296 - 383
Target Start/End: Original strand, 85807 - 85894
Alignment:
| Q |
296 |
caataaaatgtatgaatctttctgctgcagatgtttatcttgctggtactgttatgttgatttttggcatgggcttatatggattgtt |
383 |
Q |
| |
|
||||||||| ||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||| ||| | |||||||| |||| |
|
|
| T |
85807 |
caataaaataaatgaatcttgctgctgcaaatgtttatcttgctggtaccgttatgttgatttttggaatgcgtatatatggaatgtt |
85894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 84896 - 84952
Alignment:
| Q |
53 |
tgtcaaaggagttcacactggaaagatggttctgcttctagttgaagcaattggtaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
84896 |
tgtcaaaggagttcacactggaaagatggttctgaggctggttgaagcaattggtaa |
84952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University