View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1314_low_45 (Length: 422)
Name: NF1314_low_45
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_45 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 5012921 - 5012529
Alignment:
| Q |
1 |
cttggtattttgtgtatcacttggaaggaaaatcttggtctttatgggaagaataactttcgctgttgttgagagaatgaaaaaatttaggagtcaccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5012921 |
cttggtattttgtgtatcacttggaaggaaaatcttggtctttatgggaagaataactttcgctgttgttgagagaatgaaaaaatttaggagtcaccct |
5012822 |
T |
|
| Q |
101 |
catgagttgttgagttggattgaaagaatcgttttgagaacttgaactcaacatttgatcatagtggtaattgatttgtgttggatccatctccactgct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5012821 |
catgagttgttgagttggattgaaagaatcgttttgagaacttgaactcaacatttgatcatagtggtaattgatttgtgttggatccatctccactgct |
5012722 |
T |
|
| Q |
201 |
ccaacatgtgaaggaaaatattgttgtgttgacaaacacaatgatgatggaaagggtacaacatgcattccattatttccatctatatctttaatttggt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5012721 |
ccaacatgtgaaggaaaatattgttgtgttgacaaacacaatgatgatggaaagggtacaacatgcattccattatttccatctatatctttaatttggt |
5012622 |
T |
|
| Q |
301 |
taacaaatccaaaatttgataattgaggaacatgactagatgacggctccaattgataaccaagtggcatagtgttcaacgatcccaaaaaag |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5012621 |
taacaaatccaaaatttgataattgaggaacatgactagacgacggctccaattgataaccaagtggcatagtgttcaacgatcccaaaaaag |
5012529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University