View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1314_low_47 (Length: 411)
Name: NF1314_low_47
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_47 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 30 - 220
Target Start/End: Original strand, 10671671 - 10671861
Alignment:
| Q |
30 |
ataaatcatctaatttctaatcaaaaagatataaaagatgatcttcagcaatcaacaataaacgaacaacaacatatcactacattatgcaagtaataag |
129 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10671671 |
ataaatcatctaatttctaataaaaaagatataaaagatgatcttcagcaatcaacaataaacaaacaacaacatatcactacattatgcaaataataag |
10671770 |
T |
|
| Q |
130 |
tgatgagaccatttggttctattgtgaaaatgttagaaacaatgattttcacctcaccaaaacttgattttgaaaaacctctagcattgta |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10671771 |
tgatgagaccatttggttctattgtgaaaatgttagaaacaatgattttcacctcaccaaaacttgattttgaaaaaactctagcattgta |
10671861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 323 - 407
Target Start/End: Original strand, 10671962 - 10672046
Alignment:
| Q |
323 |
acacaacaacaacaatctaattcatatgatcatcaataaatctaatttcatgagactaataaaataaaatagagaataatctacc |
407 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10671962 |
acacaataacaacaatctaattcatatgatcatcaataaatctaatttcatgagactaataaaataaaatagagaacaatctacc |
10672046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 375
Target Start/End: Complemental strand, 2776334 - 2776287
Alignment:
| Q |
328 |
acaacaacaatctaattcatatgatcatcaataaatctaatttcatga |
375 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
2776334 |
acaacaacaatcttattcatatgatcatcaataaatttaatttcatga |
2776287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 339 - 407
Target Start/End: Complemental strand, 2776788 - 2776720
Alignment:
| Q |
339 |
ctaattcatatgatcatcaataaatctaatttcatgagactaataaaataaaatagagaataatctacc |
407 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| | || |||||| | | ||||||| |||||||| |
|
|
| T |
2776788 |
ctaattcatatgatcatcaatatatctaatttcataaaacctataaaaaagattagagaacaatctacc |
2776720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University