View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_5 (Length: 657)
Name: NF1314_low_5
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 28 - 644
Target Start/End: Original strand, 47593048 - 47593664
Alignment:
| Q |
28 |
cagccaatagaacaaagtcatccagatcaaatttacaagggactcctcttaccaaattagagtatccaactactcctcatggtggactagagatgtctga |
127 |
Q |
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| T |
47593048 |
cagccaatagaacaaagtcatccagatcaaatttacaagggacccctcttaccaaattagagtctccaactactcctcatggtggactagagatgtctga |
47593147 |
T |
|
| Q |
128 |
aattacaaccaaatcggagccacctacatctgttcagggtgaattacacatgcctaaaaccaagaacaaaagtaatggacataaaacaaagtttggagat |
227 |
Q |
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| T |
47593148 |
aattacaaccaaatcggagccacctacatctgttcagggtgaattacacatgcctaaaaccaagaacaaaagtaatggacataaaacaaagtttggagat |
47593247 |
T |
|
| Q |
228 |
gacaaggggggaaacaccatgccttcaggaccagtgaagcgaaaaaggatgcgtccttctaaacagaagagagcagcagcatttgagatgtctgcctcag |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47593248 |
gacaaggggggaaacaccatgccttcaggaccagtgaagcgaaaaaggatgcgtccttctaaacagaagagagcagcagcatttgagatgtctgcctcag |
47593347 |
T |
|
| Q |
328 |
cacaactcatgttagatgcaacagagagcaggtgcaacaggaaaaacaatcctatttggtttacattagttgcttcagaagaccagtaagtaacctttct |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47593348 |
cacaactcatgttagatgcaacagagagcaggtgcaacaggaaaaacaatcctatttggtttacattagttgcttcagaagaccagtaagtaacctttct |
47593447 |
T |
|
| Q |
428 |
aaatgcaatctctgttcattgnnnnnnnnctatggaccctgaagcgttgcattgaccttgttattcaggaatggagaagtttccttgccacagatctcgg |
527 |
Q |
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| T |
47593448 |
atatgcaatctctgttcattgttttttttctatggaccctgaagcgttgcattgaccttgttattcaggaatggagaagtttccttgccacagatctcgg |
47593547 |
T |
|
| Q |
528 |
cttgctacttaagaataaagtaactttttcaactcacaatgtctttctacttgtctttttcattcccctcatgnnnnnnnctttcttgagtatgcaattt |
627 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
47593548 |
cttgctacttaagaataaagtaactttttcaactcacaatgtctttctacttgtctttttcattcccctcatgtttttttctttcttgagtatgcaattt |
47593647 |
T |
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| Q |
628 |
agcaagcaacatggcct |
644 |
Q |
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||||||||||||||||| |
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| T |
47593648 |
agcaagcaacatggcct |
47593664 |
T |
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