View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1314_low_54 (Length: 392)
Name: NF1314_low_54
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_54 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 3 - 287
Target Start/End: Original strand, 48668839 - 48669123
Alignment:
| Q |
3 |
taggaagtgagaaaagttgaattgaatgaaatcattaattatgattgtagataatgcaacataccattccaacaatgatagaaatctacaaagtgcatgt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48668839 |
taggaagtgagaaaagttgaattgaatgaaataattaattatgattgtagataatgcaacataccattccaacaatgatagaaatctacaaagtgcatgt |
48668938 |
T |
|
| Q |
103 |
tccaatggtggttgacgacatttttgatgagtttagggttctcatatgctatcttggaagacataatgcagagatccattaaagcacggtttcccatgtg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48668939 |
tccaatggtggttgacgacatttttgatgagtttagggttctcatatgctatcttggaagacataatgcagagatccattaaagcacggtttcccatgtg |
48669038 |
T |
|
| Q |
203 |
tggttggaaggctccatttccatttgtggtttgaagatcaagcctggcgtctaagtgaccaattgtacttataaaagattgagaa |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48669039 |
tggttggaaggctccatttccatttgtggtttgaagatcaagcctggcgtctaagtgaccaattgtacttacaaaagattgagaa |
48669123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University