View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_59 (Length: 377)
Name: NF1314_low_59
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 176 - 346
Target Start/End: Complemental strand, 17439671 - 17439501
Alignment:
| Q |
176 |
gactggaagatatttcattcaactagaataaagagagtccatacaaacagttgctacaatttgatcaggggcacaacccacccaagatttagaacctaaa |
275 |
Q |
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| T |
17439671 |
gactggaagatatttcattcaactagaataaagagagtccatacaaacagttgctacaatttgatcaggggcacaacccacccaagatttagaacctaaa |
17439572 |
T |
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| Q |
276 |
ctaatagcaactttaaccaagccatgggcagccttgtttttggttctactaacaaaagcaacactaacatt |
346 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17439571 |
ctaacagcaactttaaccaagccatgggcagccttgtttttggttctactaacaaaagcaacactaacatt |
17439501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 146; Significance: 8e-77; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 34616032 - 34616177
Alignment:
| Q |
8 |
tagcataggtgcagaaaggagtggaagaagatgaagatgaagccattgatgcttgaagtttaagctccatggaaatgctactgttactatcttctatcca |
107 |
Q |
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| T |
34616032 |
tagcataggtgcagaaaggagtggaagaagatgaagatgaagccattgatgcttgaagtttaagctccatggaaatgctactgttactatcttctatcca |
34616131 |
T |
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| Q |
108 |
ttcgtgaaatacaaactaagattaattttgatgagtaaaactcctt |
153 |
Q |
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| T |
34616132 |
ttcgtgaaatacaaactaagattaattttgatgagtaaaactcctt |
34616177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 34743469 - 34743614
Alignment:
| Q |
8 |
tagcataggtgcagaaaggagtggaagaagatgaagatgaagccattgatgcttgaagtttaagctccatggaaatgctactgttactatcttctatcca |
107 |
Q |
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| T |
34743469 |
tagcataggtgcagaaaggagtggaagaagatgaagatgaagccattgatgcttgaagtttaagctccatggaaatgctactgttactatcttctatcca |
34743568 |
T |
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| Q |
108 |
ttcgtgaaatacaaactaagattaattttgatgagtaaaactcctt |
153 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34743569 |
ttcgtgaaatacaaactaagattaattttgatgagtaaaactcctt |
34743614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 11544864 - 11544943
Alignment:
| Q |
8 |
tagcataggtgcagaaaggagtggaagaagatgaagatgaagccattgatgcttgaagtttaagctccatggaaatgcta |
87 |
Q |
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| T |
11544864 |
tagcataggtgcagaaaggagtggaagaagatgaagatgaagccattgatgcttgaagtttaagctacatggaaatgcta |
11544943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 34758580 - 34758655
Alignment:
| Q |
8 |
tagcataggtgcagaaaggagtggaagaagatgaagatgaagccattgatgcttgaagtttaagctccatggaaat |
83 |
Q |
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| T |
34758580 |
tagcataggtgcagaaaggagtggaagaagatgaagatgaagccattgatgcttgaagtttaagctccatggaaat |
34758655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 209 - 346
Target Start/End: Original strand, 30019295 - 30019432
Alignment:
| Q |
209 |
agagtccatacaaacagttgctacaatttgatcaggggcacaacccacccaagatttagaacctaaactaatagcaactttaaccaagccatgggcagcc |
308 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||| ||||||| | |||||||||| |||||||||||||| |
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| T |
30019295 |
agagtccatacaaacagttgctgcaatttgatcaggggcacaatccacccatgatttagaacccaaactaacaacaactttaactaagccatgggcagct |
30019394 |
T |
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| Q |
309 |
ttgtttttggttctactaacaaaagcaacactaacatt |
346 |
Q |
| |
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||||| |||||||||| ||||||||||||||||||||| |
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| T |
30019395 |
ttgttcttggttctaccaacaaaagcaacactaacatt |
30019432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 209 - 346
Target Start/End: Complemental strand, 30041400 - 30041263
Alignment:
| Q |
209 |
agagtccatacaaacagttgctacaatttgatcaggggcacaacccacccaagatttagaacctaaactaatagcaactttaaccaagccatgggcagcc |
308 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||| ||||||| | |||||||||| |||||||||||||| |
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| T |
30041400 |
agagtccatacaaacagttgctgcaatttgatcaggggcacaatccacccatgatttagaacccaaactaacaacaactttaactaagccatgggcagct |
30041301 |
T |
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| Q |
309 |
ttgtttttggttctactaacaaaagcaacactaacatt |
346 |
Q |
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||||| |||||||||| ||||||||||||||||||||| |
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| T |
30041300 |
ttgttcttggttctaccaacaaaagcaacactaacatt |
30041263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 209 - 346
Target Start/End: Complemental strand, 30235538 - 30235401
Alignment:
| Q |
209 |
agagtccatacaaacagttgctacaatttgatcaggggcacaacccacccaagatttagaacctaaactaatagcaactttaaccaagccatgggcagcc |
308 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||| ||||||| | |||||||||| |||||||||||||| |
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| T |
30235538 |
agagtccatacaaacagttgctgcaatttgatcaggggcacaatccacccatgatttagaacccaaactaacaacaactttaactaagccatgggcagct |
30235439 |
T |
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| Q |
309 |
ttgtttttggttctactaacaaaagcaacactaacatt |
346 |
Q |
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||||| |||||||||| ||||||||||||||||||||| |
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| T |
30235438 |
ttgttcttggttctaccaacaaaagcaacactaacatt |
30235401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 250 - 346
Target Start/End: Complemental strand, 30110839 - 30110741
Alignment:
| Q |
250 |
aacccacccaagatttagaacctaaactaatagcaactttaaccaagccatgggcagccttgtttttg--gttctactaacaaaagcaacactaacatt |
346 |
Q |
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|||||||||| ||||||||||| ||||||| | |||||||||| |||||||||||||| ||||| ||| ||||||| ||||||||||||||||||||| |
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| T |
30110839 |
aacccacccatgatttagaacccaaactaacaacaactttaactaagccatgggcagctttgttcttggcgttctaccaacaaaagcaacactaacatt |
30110741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 250 - 346
Target Start/End: Complemental strand, 30122125 - 30122027
Alignment:
| Q |
250 |
aacccacccaagatttagaacctaaactaatagcaactttaaccaagccatgggcagccttgtttttg--gttctactaacaaaagcaacactaacatt |
346 |
Q |
| |
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|||||||||| ||||||||||| ||||||| | |||||||||| |||||||||||||| ||||| ||| ||||||| ||||||||||||||||||||| |
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| T |
30122125 |
aacccacccatgatttagaacccaaactaacaacaactttaactaagccatgggcagctttgttcttggcgttctaccaacaaaagcaacactaacatt |
30122027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 250 - 346
Target Start/End: Original strand, 30077864 - 30077962
Alignment:
| Q |
250 |
aacccacccaagatttagaacctaaactaatagcaactttaaccaagccatgggcag--ccttgtttttggttctactaacaaaagcaacactaacatt |
346 |
Q |
| |
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|||||||||| ||||||||||| ||||||| | ||| |||||| ||||||||||||| | ||||| |||||||||| ||||||||||||||||||||| |
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| T |
30077864 |
aacccacccatgatttagaacccaaactaacaacaaatttaactaagccatgggcagctctttgttcttggttctaccaacaaaagcaacactaacatt |
30077962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 188 - 338
Target Start/End: Original strand, 15055547 - 15055697
Alignment:
| Q |
188 |
tttcattcaactagaataaagagagtccatacaaacagttgctacaatttgatcaggggcacaacccacccaagatttagaacctaaactaatagcaact |
287 |
Q |
| |
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|||||||||| ||||| ||||||| | | |||||||| | ||| ||||||||||||| | |||||||||||||||| |||| | |||| ||| ||||||| |
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| T |
15055547 |
tttcattcaattagaagaaagagaattcttacaaacaatggctgcaatttgatcaggagtacaacccacccaagatctagagcttaaattaacagcaact |
15055646 |
T |
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| Q |
288 |
ttaaccaagccatgggcagccttgtttttggttctactaacaaaagcaaca |
338 |
Q |
| |
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| |||||||||||| ||||| ||||| ||||||||||||| |||||||||| |
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| T |
15055647 |
tcaaccaagccatgagcagctttgttcttggttctactaataaaagcaaca |
15055697 |
T |
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