View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_61 (Length: 376)
Name: NF1314_low_61
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_61 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 9e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 92 - 348
Target Start/End: Complemental strand, 3872061 - 3871808
Alignment:
| Q |
92 |
catgttctttctccttgatcattcattattgaacctgtttatctgagcccagaaaactagatctaaattctctatgtatcaattccaaacacattttact |
191 |
Q |
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| T |
3872061 |
catgttctttctccttgatcattcattattgaacttgttcatctaagcccggaaagctagatctaaattctctatgtatcaattccaaacccattttacg |
3871962 |
T |
|
| Q |
192 |
acatccacataaaagaaatttctcacaaatcca-tccataaactattctactaaggttgcctaatccttaaccacctgttcttcattcaaccacttcgtc |
290 |
Q |
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|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||| | ||||||||||| ||| |
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| T |
3871961 |
acatccacataaaataaatttctcacaaatccattccataaactattctactaaggtttcctaatcctcaaccacctgtgc----ttcaaccactttgtc |
3871866 |
T |
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| Q |
291 |
ttctccgccaatgtcttccatacattccctcccagaaattatcatcgcacatgaacat |
348 |
Q |
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| T |
3871865 |
ttctccgccaatgtctgtcatgtattccctcccataaattatcatcacacatgaacat |
3871808 |
T |
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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 45991979 - 45991899
Alignment:
| Q |
164 |
tatgtatcaattccaaacacattttactacatccacataaaa-gaaatttctcacaaatcca-tccataaactattctacta |
243 |
Q |
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| T |
45991979 |
tatgtatcaattctaaac-cattttacgacatccacataaaaagaaatttctcacagatccattccataaactattctacta |
45991899 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 45992156 - 45992128
Alignment:
| Q |
1 |
attgtttgatttttggatgtctagttggc |
29 |
Q |
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| T |
45992156 |
attgtttgatttttggatgtctagttggc |
45992128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 46151899 - 46151819
Alignment:
| Q |
164 |
tatgtatcaattccaaacacattttactacatccacataaaa-gaaatttctcacaaatcca-tccataaactattctacta |
243 |
Q |
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||||||||||||| |||| || ||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
46151899 |
tatgtatcaattctaaac-cactttacgacatccacataaaaagaaatttctcacaaatccattccataaactattctacta |
46151819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 46152069 - 46152041
Alignment:
| Q |
1 |
attgtttgatttttggatgtctagttggc |
29 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
46152069 |
attgtttgatttttggatgtctagttggc |
46152041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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