View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_62 (Length: 375)
Name: NF1314_low_62
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_62 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 32 - 368
Target Start/End: Original strand, 6395108 - 6395443
Alignment:
| Q |
32 |
gtgttatgtatgttagctagtctaacatagtaattcaattgagttctatagttctatcaagaatttgggtggaattttaccaagaatctggaaatttttg |
131 |
Q |
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| T |
6395108 |
gtgttatgtatgttagctagtctaacatagtaattcaattgagttctatagttctatcaagaatttgggtggaattttaccaagaatctggaaatttttg |
6395207 |
T |
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| Q |
132 |
agatcccgtaagatcaaaggtaaagggaagacnnnnnnnnnnactagtttaagagtttatagtgttactgctcctatagtatatctatcatataaaatgc |
231 |
Q |
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| T |
6395208 |
agatcccgtaagatcaaaggtaaagagaagacttttttttt-actagtttaagagtttatagtgttactgctcctatagtatatatctcatataaaatgc |
6395306 |
T |
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| Q |
232 |
atatgcnnnnnnntaggtgcattataacagttgatacatgttagccaactatgaaatttcttcccattctcatcaatttcttctgaatttgaaactggtt |
331 |
Q |
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| T |
6395307 |
atatgcaaaaaaataggtacattataacagttgatacatgttagccaactatgaaatttcttcccattctcatcaatttcttctgaatttgaaactggtt |
6395406 |
T |
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| Q |
332 |
tttataatttgtgtgttcaatttgcagattcatctca |
368 |
Q |
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| T |
6395407 |
tttataatttgtgtgttcaatttgcagattcttctca |
6395443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 43597806 - 43597885
Alignment:
| Q |
283 |
tgaaatttcttcccattctcatcaatttcttctgaatttgaaactggtttttataatttgtgtgttcaatttgcagattc |
362 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| || ||||| || | | ||||||||||||| |||||| |
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| T |
43597806 |
tgaaatttcttaccattctcatcaatttcttctgaatttgaagctaatttttctagtatatgtgttcaatttgtagattc |
43597885 |
T |
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