View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_66 (Length: 363)
Name: NF1314_low_66
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_66 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 51858087 - 51858426
Alignment:
| Q |
1 |
ttcgattccgtagtgtctgtgctttatggcgctctattctttcccctccttttcatagacttcatattcaagctgctaagtttttgctactcaccgaaac |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51858087 |
ttcgattccgtagtgcctgtgctttatggcgctctattctttcccctccttttcatagacttcatattcaagctgctaagtttttgctactcaccgaaac |
51858186 |
T |
|
| Q |
101 |
caaaatatttcgcacacaaccattgttgccaacttcgaaatctagcaaacttcgtcacttagatattttgactaacaatcacatctcacacacattccca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51858187 |
caaaatatttcgcacacaaccattgttgccaacttcgaaatctagcaaacttcgtcacttagatattttgactaacaatcacatctcacacacattccca |
51858286 |
T |
|
| Q |
201 |
tctaatgtgttagatttcatgaacttacgagttaaggaaatgtttcaagcacatacactcagtttttctagatatgggcgtggtttaatttcatttgagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
51858287 |
tctaatgtgttagatttcatgaacttacgagttaaggaaatgtttcaagcacatactctcagtttttctagatatgggcgtggtttaattgcatttgagc |
51858386 |
T |
|
| Q |
301 |
cccttaatggtgtttataaagtagtgttcttttctgtcga |
340 |
Q |
| |
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| T |
51858387 |
cccttaatggtgtttataaagtagtgttgttttctgtcga |
51858426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 135 - 337
Target Start/End: Complemental strand, 34865268 - 34865066
Alignment:
| Q |
135 |
tcgaaatctagcaaacttcgtcacttagatattttgactaacaatcacatctcacacacattcccatctaatgtgttagatttcatgaacttacgagtta |
234 |
Q |
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||||||||| |||||||||||||||||||| || | ||||||| ||| || |||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
34865268 |
tcgaaatctggcaaacttcgtcacttagatgttgtaactaacactcatatgtcacacactttcccgtctaatgtgttagatttcatgaacttacgagtta |
34865169 |
T |
|
| Q |
235 |
aggaaatgtttcaagcacatacactcagtttttctagatatgggcgtggtttaatttcatttgagccccttaatggtgtttataaagtagtgttcttttc |
334 |
Q |
| |
|
|||| ||||||||||| |||| ||| |||||||||| |||| ||| ||||||| |||||||||||||| || |||||||||||||||||| ||||| |
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| T |
34865168 |
tggaattgtttcaagcatatactatcaatttttctagagatggaggtgatttaattgcatttgagcccctttctgatgtttataaagtagtgttgttttc |
34865069 |
T |
|
| Q |
335 |
tgt |
337 |
Q |
| |
|
||| |
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|
| T |
34865068 |
tgt |
34865066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 34865453 - 34865308
Alignment:
| Q |
1 |
ttcgattccgtagtgtctgtgctttatggcgctctattctttcccctccttt------------tcatagacttcatattcaagctgctaagtttttgct |
88 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||| ||||| |||| || || |||||||||||| |
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| T |
34865453 |
ttcgattccgtagtgtctgtgctttattgcgctctattcttccccctccttttccttctccttctcatacacttcgcattccagatggtaagtttttgct |
34865354 |
T |
|
| Q |
89 |
actcaccgaaaccaaaatatttcgcacacaaccattgttgccaact |
134 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| || |||||| |
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|
| T |
34865353 |
tttcaccgaaaccaaaatatttcgcctacaaccattatttccaact |
34865308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 34145347 - 34145460
Alignment:
| Q |
138 |
aaatctagcaaacttcgtcacttagatattttgactaaca-atcacatctcacacacattcccatctaatgtgttagatttcatgaacttacgagttaag |
236 |
Q |
| |
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|||||| | ||| |||||||||||||| | |||||||||| ||| ||| ||||||||| ||||| || |||||||||||||||||||| ||||| | |
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| T |
34145347 |
aaatctggaaaatttcgtcacttagatgtcttgactaacacatc-cataacacacacatacccattcaacgtgttagatttcatgaacttgcgagtaaga |
34145445 |
T |
|
| Q |
237 |
gaaatgtttcaagca |
251 |
Q |
| |
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||| ||||||||||| |
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| T |
34145446 |
gaattgtttcaagca |
34145460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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