View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1314_low_68 (Length: 360)
Name: NF1314_low_68
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_68 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 30 - 347
Target Start/End: Original strand, 8536761 - 8537078
Alignment:
| Q |
30 |
ataatgagatccataacatcaaatagaattcagttagtttgaagatcaatctcaagtttaatgatactcaaaataacaaaagataaactagcccactata |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8536761 |
ataatgagatccataacatcaaatagaattcggttagtttgaagatcaatctcaagtttaatgatactcaaaataacaaaagataaactagcccactata |
8536860 |
T |
|
| Q |
130 |
gcatattttaccaaaatgataaaatatgtaatcaaagaaacaaaataagtaggtccacagttatagaaacggatgcaaagaaaattggtaaaaaactact |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8536861 |
gcatattttaccaaaatgataaaatatgtaatcaaagaaacaaaataagtaggtccacagttatagaaacggatgcaaagaaaattggtaaaaaactact |
8536960 |
T |
|
| Q |
230 |
aactataactgaatcagtatcttaatcaacctaaccatttcttttcatgcccaaagtagattcagtgatgctctcaagcttcttcaacatgttcacaaac |
329 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8536961 |
aactataactaaaacagtatcttaatcaacctaaccattttttttcatgcccaaagtagattcagtgatgctctcaagcttcttcaacatgttcacaaac |
8537060 |
T |
|
| Q |
330 |
acatatgtttcttcattc |
347 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
8537061 |
acatatgtttcttcattc |
8537078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University