View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_69 (Length: 359)
Name: NF1314_low_69
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_69 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 13 - 331
Target Start/End: Complemental strand, 44027845 - 44027527
Alignment:
| Q |
13 |
cagatgtagaaattctaatggtgaatcttcaaagtgggaatgtagatggggtaccaatgcctcccattaatgcataaactgtgacatcctctaaaccaaa |
112 |
Q |
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| T |
44027845 |
cagatgtagaaattctaatggtgaatcttcaaagtgggaatgtagatggggtaccaatgcctcccattaatgcataaactgtgacatcctctaaaccaaa |
44027746 |
T |
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| Q |
113 |
cctatgtctagttacatgttattggttttaagaactactttatacactgtttccctctttatggtttcatatacacatcacaatgaacttatctacatta |
212 |
Q |
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| T |
44027745 |
cctatgtctagttacatgttattggttttaagaactactttatacactgtttccctctttatggtttcatatacacatcacaatgaacttatctacatta |
44027646 |
T |
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| Q |
213 |
acagttaggtctatattattgatatgtcaaaacaaaatttgagcacgagttcaatgttttacggggaagtaaatgttgaacaatataaatttgggactca |
312 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
44027645 |
acagttaggtctatattattgatatatcaaaacaaaatttgagcacgagttcaatgttttacaggaaagtaaatgttgaacaatataaatttgggactca |
44027546 |
T |
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| Q |
313 |
tacgtaatgaattacgttt |
331 |
Q |
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| T |
44027545 |
tacgtaatgaattacgttt |
44027527 |
T |
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