View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_72 (Length: 353)
Name: NF1314_low_72
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_72 |
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Alignment Details
Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 174 - 341
Target Start/End: Original strand, 5603856 - 5604022
Alignment:
| Q |
174 |
agttcttatccaaaaatataagaagttattttgaactcatttattaaacaagaagatgat-aaaaatcacannnnnnncaaggaaaaaacgtctttttag |
272 |
Q |
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| T |
5603856 |
agttcttatccaaaaatacaagaagttattttgaactcatttattaaacaagaagatgataaaaaaacacattttttt-aagg-aaaaatatctttttaa |
5603953 |
T |
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| Q |
273 |
aatgatttatatgagccactactcaaagttgcttctcattttaaacattttttaaaattttatcattca |
341 |
Q |
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| T |
5603954 |
aatgatttatatgagccactaatcaaagttgcttctgattttaaacatttttttaaatttgatcattca |
5604022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 29 - 139
Target Start/End: Original strand, 5603709 - 5603821
Alignment:
| Q |
29 |
aagtgttacaaagagagtgttcataacactcatcttatatgaaattcaatgtccgattgagacggtttttgttcctgatt--gaaacaatttgttataga |
126 |
Q |
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|||| |||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||| ||| ||||||| |
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| T |
5603709 |
aagtattacaaagtgggtgttcataacactcatcttatatgaaattcaatgtctgattgagacggtttttgttcctgattgagacacagtttattataga |
5603808 |
T |
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| Q |
127 |
ttaaaaagagtga |
139 |
Q |
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| T |
5603809 |
ttaaaaagagtga |
5603821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 338
Target Start/End: Original strand, 23736603 - 23736637
Alignment:
| Q |
304 |
cttctcattttaaacattttttaaaattttatcat |
338 |
Q |
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| T |
23736603 |
cttctcattttaagcattttttaaaattttatcat |
23736637 |
T |
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