View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_73 (Length: 352)
Name: NF1314_low_73
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_73 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 135 - 352
Target Start/End: Complemental strand, 43698095 - 43697878
Alignment:
| Q |
135 |
actcttcatgaaataacaaaaggacagagtatgtctacttttgtctaatgccagtggagtttagcaatgcagaatatatattttttcttaagtggaattc |
234 |
Q |
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| T |
43698095 |
actcttcatgaaataacaaaaggacagagtatgtctacttttgtctaatgccggtggagtttagcaatgcagaatatatattttttcttaagtggaattc |
43697996 |
T |
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| Q |
235 |
caaaactgtgcatttttaactttggatacactttgcaacacttccaacggaagaatatcgccaatgacagcaaccattttggtgtctagatctaccttat |
334 |
Q |
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| T |
43697995 |
caaaactgtgcatttttaactttggatacactttgcaacacttccaacggaagaatatcgccaatgacagcaaccattttggtgtctagatctaccttat |
43697896 |
T |
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| Q |
335 |
atgagctcactcctgttc |
352 |
Q |
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| T |
43697895 |
atgagctcactcctgttc |
43697878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 43698245 - 43698142
Alignment:
| Q |
7 |
gcaccacagagcaaaatgtgcacgactgagctggagaaagatcaaccagcattccattgttttctttcctgcaagagaattgctagaacatgcatggcac |
106 |
Q |
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| T |
43698245 |
gcaccatagagcaaaatgtgcatgaccgagctggagaaagatcaaccagcattccattgttttctttcctgcaagagaattgctagaacatgcatggcac |
43698146 |
T |
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| Q |
107 |
ggag |
110 |
Q |
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| T |
43698145 |
ggag |
43698142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 229 - 348
Target Start/End: Original strand, 32212038 - 32212157
Alignment:
| Q |
229 |
gaattccaaaactgtgcatttttaactttggatacactttgcaacacttccaacggaagaatatcgccaatgacagcaaccattttggtgtctagatcta |
328 |
Q |
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| T |
32212038 |
gaattccaaatctctgcatttttcaccttagatacactttccaacacttcaaagggaagaatgtcacccataacaactaccattttggtatctagatcca |
32212137 |
T |
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| Q |
329 |
ccttatatgagctcactcct |
348 |
Q |
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| T |
32212138 |
ccttatatgagctcactcct |
32212157 |
T |
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