View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_75 (Length: 349)
Name: NF1314_low_75
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_75 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 29 - 300
Target Start/End: Complemental strand, 39325240 - 39324969
Alignment:
| Q |
29 |
agacttgaaatataaaaccaatcaaattaatggtcaaatctagctaccaagaagggtcaatcagatacaaaagaaatcatgaacctttacatataaatct |
128 |
Q |
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| T |
39325240 |
agacttgaaatataaaaccaatcaaattaatggtcaaatctagctaccaagaagggtcaatcagatacaaaagaaatcatgaacctttacatataaatct |
39325141 |
T |
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| Q |
129 |
ttagtgtagttgaactttaatttgatactaaagtagcaatctattaagtaaagaaaaatgaattcgggcaatgggcacacttttgcttttgaagaaaaat |
228 |
Q |
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| T |
39325140 |
ttagtgtagttgaactttaatttgatactaaagtagcaatctattaagtaaagaaaaatgaattcgggcaatgggcacacttttgcttttgaagaaaaat |
39325041 |
T |
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| Q |
229 |
gatagtaaaaattaaatattgatgtttgtgttaaaatcacatatatgccacttaagcggtaaaaattgagta |
300 |
Q |
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| T |
39325040 |
gatagtaaaaattaaatattgatgtttgtgttaaaatcacatatatgccacttaagcggtaaaaattgagta |
39324969 |
T |
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