View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_76 (Length: 349)
Name: NF1314_low_76
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_76 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 214 - 341
Target Start/End: Original strand, 26085294 - 26085421
Alignment:
| Q |
214 |
atgcatcctataagatgctcacataatcttgataatgatgaagaaaggtattataaaattacaaattgaagttagagaacttcaatgatgaaaatgaaac |
313 |
Q |
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| T |
26085294 |
atgcatcctataagatgctcacataatcttgataatgatgaagaaaggtattataaaattactaattgaagttagagaacttcaatgatgaaaatgaaac |
26085393 |
T |
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| Q |
314 |
ctgggtcttgggtacagcaacagctagg |
341 |
Q |
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||||||||||||||||||||||| |||| |
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| T |
26085394 |
ctgggtcttgggtacagcaacaggtagg |
26085421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 26085107 - 26085223
Alignment:
| Q |
27 |
tcaactccctcacctgctttttcagctctgcatttttatctgataagagtgccacaaattctgattttaacatgttaactctatctgatgattcagattc |
126 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26085107 |
tcaactccctcacctgttttttcagctctgcatttttatctgataagagtgccacaaattctgattttaacatgttaactctatctgatgattcagattc |
26085206 |
T |
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| Q |
127 |
agctgaattttcctgcc |
143 |
Q |
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||||||||||||||||| |
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| T |
26085207 |
agctgaattttcctgcc |
26085223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 31 - 143
Target Start/End: Original strand, 26097392 - 26097504
Alignment:
| Q |
31 |
ctccctcacctgctttttcagctctgcatttttatctgataagagtgccacaaattctgattttaacatgttaactctatctgatgattcagattcagct |
130 |
Q |
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| T |
26097392 |
ctccctcaactgttttttcagctctgcatttttatctgataacagtgccacaaattctgattttaacatgttaactctatctgatgattcacattcagct |
26097491 |
T |
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| Q |
131 |
gaattttcctgcc |
143 |
Q |
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||||||||||||| |
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| T |
26097492 |
gaattttcctgcc |
26097504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 26065403 - 26065519
Alignment:
| Q |
27 |
tcaactccctcacctgctttttcagctctgcatttttatctgataagagtgccacaaattctgattttaacatgttaactctatctgatgattcagattc |
126 |
Q |
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||||||| ||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26065403 |
tcaactcactcacttgttttttcagctctgcatttttatctgataagagcgccacaaattctgattttaacatgttaactttatctgatgattcagattc |
26065502 |
T |
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| Q |
127 |
agctgaattttcctgcc |
143 |
Q |
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|||||| ||||||||| |
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| T |
26065503 |
tgctgaactttcctgcc |
26065519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 26036755 - 26036868
Alignment:
| Q |
27 |
tcaactccctcacctgctttttcagctctgcatttttatctgataagagtgccacaaattctgattttaacatgttaactctatctgatgattcagattc |
126 |
Q |
| |
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|||||||||||||||| ||||||||||| || ||||| ||||||| ||||||||| |||||||| |||||||| |||||||||||||||||| |||| |
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| T |
26036755 |
tcaactccctcacctgttttttcagctcagcgtttttgtctgatac---tgccacaaactctgatttcaacatgttgactctatctgatgattcacattc |
26036851 |
T |
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| Q |
127 |
agctgaattttcctgcc |
143 |
Q |
| |
|
|||||| |||||||||| |
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| T |
26036852 |
agctgagttttcctgcc |
26036868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 26048361 - 26048413
Alignment:
| Q |
231 |
ctcacataatcttgataatgatgaagaaaggtattataaaattacaaattgaa |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26048361 |
ctcacataatcttgataatgatgaagaaaggtattataaaattacaagttgaa |
26048413 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 26053542 - 26053594
Alignment:
| Q |
231 |
ctcacataatcttgataatgatgaagaaaggtattataaaattacaaattgaa |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26053542 |
ctcacataatcttgataatgatgaagaaaggtattataaaattacaagttgaa |
26053594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 26098702 - 26098754
Alignment:
| Q |
231 |
ctcacataatcttgataatgatgaagaaaggtattataaaattacaaattgaa |
283 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26098702 |
ctcacataatattgataatgatgaagaaaggtattataaaattacaagttgaa |
26098754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 26120690 - 26120745
Alignment:
| Q |
27 |
tcaactccctcacctgctttttcagctctgcatttttatctgataagagtgccaca |
82 |
Q |
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| T |
26120690 |
tcaactccctcaactgtttttttagctctgcatttttatctgataaaagtgccaca |
26120745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 26056142 - 26056184
Alignment:
| Q |
299 |
tgatgaaaatgaaacctgggtcttgggtacagcaacagctagg |
341 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26056142 |
tgatgaaaatgaaacctgggtcttgggtacagcaacaggtagg |
26056184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 26067804 - 26067846
Alignment:
| Q |
299 |
tgatgaaaatgaaacctgggtcttgggtacagcaacagctagg |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26067804 |
tgatgaaaatgaaacctgggtcttgggtacagcaacaggtagg |
26067846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 26111716 - 26111758
Alignment:
| Q |
299 |
tgatgaaaatgaaacctgggtcttgggtacagcaacagctagg |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26111716 |
tgatgaaaatgaaacctgggtcttgggtacagcaacaggtagg |
26111758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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