View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_79 (Length: 334)
Name: NF1314_low_79
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_79 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 13 - 305
Target Start/End: Original strand, 37556880 - 37557172
Alignment:
| Q |
13 |
aatatgttgtgtctatataatataaattagtcaagagaggcttttaattaagtaattttcatatgtattattatcatatgaatggttcaaatttaatata |
112 |
Q |
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| T |
37556880 |
aatatgttgtgtctatataatataaattagtcaagagaggcttttaattaagtaattttcatatgtattattatcatatgaatggttcaaatttaatata |
37556979 |
T |
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| Q |
113 |
ttgttatggattcttttgactttgtccaggttggtcttcaaaacaaatgggctgaagttgtctctgcactgaaattggaaggcaacaatgcaatgttatc |
212 |
Q |
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| T |
37556980 |
ttgttatggattcttttgactttgtccaggttggtcttcaaaacaaatggactgaagttgtctctgcactgaaattggaaggcaacaatgcaatgttatc |
37557079 |
T |
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| Q |
213 |
tgctcaagtcgaaaagatctatgcaacacttctatacaaatttgagaaattgtacttctacaggtttcctccaaccggctgcgcccaaggtat |
305 |
Q |
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| T |
37557080 |
tgctcaagtcgaaaagatctatgcaacacttctatacaaatttgagaaattgtacttctacaggtttcctccaaccggcagctcccaaggtat |
37557172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 287
Target Start/End: Original strand, 41552259 - 41552447
Alignment:
| Q |
102 |
aatttaatatattgttatggattcttttgactttgtcc---aggttggtcttcaaaacaaatgggctgaagttgtctctgcactgaaattggaaggcaac |
198 |
Q |
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| T |
41552259 |
aatttaatatgttgttatggattctcttgaatgtttcctacaggttggccaagaaaagaaatggagtgaagttgtttctgcactaaaactggaaggaaac |
41552358 |
T |
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| Q |
199 |
aatgcaatgttatctgctcaagtcgaaaagatctatgcaacacttctatacaaatttgagaaattgtacttctacaggtttcctccaac |
287 |
Q |
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| T |
41552359 |
aatgcaaccttatgtgctcaagttgaaaatctctatggttatcttctttacgaatttgagaaattgtacttctacaggtctcctgcaac |
41552447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 287
Target Start/End: Original strand, 34255768 - 34255903
Alignment:
| Q |
152 |
aaaacaaatgggctgaagttgtctctgcactgaaattggaaggcaacaatgcaatgttatctgctcaagtcgaaaagatctatgcaacacttctatacaa |
251 |
Q |
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|||| ||||||| ||||||||| |||||||| ||| ||||||| |||||||||| || | || |||| | |||||| ||||| | |||||| ||||| |
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| T |
34255768 |
aaaagaaatggggtgaagttgtttctgcactaaaactggaaggaaacaatgcaaccttgtgtgatcaacttgaaaagctctataaagaacttctgtacaa |
34255867 |
T |
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| Q |
252 |
atttgagaaattgtacttctacaggtttcctccaac |
287 |
Q |
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| T |
34255868 |
atttgagacattgtacttctacaggtctcctgcaac |
34255903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 41552171 - 41552232
Alignment:
| Q |
13 |
aatatgttgtgtctatataatataaattagtcaagagaggcttttaattaagtaattttcatatgtat |
80 |
Q |
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| T |
41552171 |
aatatgttgtgtctata--atctaaattagtcaagagaggctt----ttaagtaattttcatatgtat |
41552232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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