View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_8 (Length: 629)
Name: NF1314_low_8
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_8 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 213 - 629
Target Start/End: Complemental strand, 21484600 - 21484187
Alignment:
| Q |
213 |
acaccattgaaaaccattgcatgtacttcaactacaacaactactacctcttcttcttcctcagcttcttcttcatctgcagcttcttgggctgttttga |
312 |
Q |
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| T |
21484600 |
acaccattgaaaaccattgcatgtacttcaactacaacaactactacctcttcttcttcctcagcttcttcttcatctgcagcttcttgggctgttttga |
21484501 |
T |
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| Q |
313 |
aatcagatgttgaagtagatcatcaaggttatcatcaaaaacatggtcatccattagattatcatcatggtcatcctccaacaactttgtcatcaactgc |
412 |
Q |
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| T |
21484500 |
aatcagatgttgaagtagatcatcaaggttatca---aaaacatggtcatccattagattatcatcatggtcatcctccaacaactttgtcatcaactgc |
21484404 |
T |
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| Q |
413 |
ttctatggagatttctcagcaacagcaacaagatcttggtgtttctaacaatgatgttgttgttggtggtggtgattgcatggatgatgttaacattatg |
512 |
Q |
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| T |
21484403 |
ttctatggagatttctcaacaacagcaacaagatcttggtgtttctaacaatgatgttgttgttggtggtggtgattgcatggatgatgttaacattatg |
21484304 |
T |
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| Q |
513 |
gatacttttggttacatggagcttttagaagctaatgaattttttgaccctgcttcgatttttcaaaatgaagatgaaaaccctttagtggatttcacac |
612 |
Q |
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| T |
21484303 |
gatacttttggttacatggagcttttagaagctaatgaattttttgaccctgcttcgatttttcaaaatgaagatgaaaaccctttagtggatttcactc |
21484204 |
T |
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| Q |
613 |
aagagcaacaagttcaa |
629 |
Q |
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| T |
21484203 |
aagagcaacaagttcaa |
21484187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 79 - 182
Target Start/End: Complemental strand, 21484734 - 21484631
Alignment:
| Q |
79 |
atactacaaatgatcaagatggtgatcttttaggtatgaatatgaatgatgatgcatctatgttctatgctgattttccacctttacctgattttccatg |
178 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21484734 |
atactacaaatgatcaagatggtgatcttttaggtatgaatatgaatgatgatgcatctatgttctatgctgattttcctcctttacctgattttccatg |
21484635 |
T |
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| Q |
179 |
catg |
182 |
Q |
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|||| |
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| T |
21484634 |
catg |
21484631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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