View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_86 (Length: 323)
Name: NF1314_low_86
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_86 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 176 - 323
Target Start/End: Original strand, 43697752 - 43697891
Alignment:
| Q |
176 |
tgataaaagcttataggttgcccacacctcccaacttatgagatatagtatcaaaatgtggcatggtatagacatggggctattttgttaatttgcttag |
275 |
Q |
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| T |
43697752 |
tgataaaagcttataggttgcccacacctcccatcttatgagatatagtatcaaaatgtggcatggtatagacatggggatattttg----tttgcttag |
43697847 |
T |
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| Q |
276 |
tattttaattgactgactctttgcacttatatatgaacaggagtgagc |
323 |
Q |
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| T |
43697848 |
tattttaat----tgactctttgcacttatatatgaacaggagtgagc |
43697891 |
T |
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Target: chr8; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 43697552 - 43697632
Alignment:
| Q |
30 |
caagaaaagttgagaaacatatatcaaagcttgaaggtcagtatttgcaatttctttgcatatacataatctaatagttca |
110 |
Q |
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| T |
43697552 |
caagaaaagttgagaaacatatatcaaagcttgaaggtgagtatttggaatttctttacatatacataatctaatagttca |
43697632 |
T |
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