View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_89 (Length: 319)
Name: NF1314_low_89
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_89 |
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| [»] scaffold0565 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 7 - 290
Target Start/End: Original strand, 36361341 - 36361625
Alignment:
| Q |
7 |
tccaagaatattaactatggtagtgacacaatttaatatgccactagcaagaccatgctgatag-atcagagctgagctaagtggctaatatcaatagga |
105 |
Q |
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| T |
36361341 |
tccaagaacattaactatggtagtgacacaatttaatatgccactagcaagaccatgctgataggatcagagctgagctaagtggctaatatcaatagga |
36361440 |
T |
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| Q |
106 |
taagcatcatctggagattgagcactgtaagctctctgagcaacaacaacatttccagcttcagttggatgaaaagcatcccaaaacaaatactctcttc |
205 |
Q |
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| T |
36361441 |
taagcatcatctggagattgagcactgtaagctctctgagcaacaacaacatttccagcttcagttggatgaaaagcatcccaaaacaaatactctcttc |
36361540 |
T |
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| Q |
206 |
tgttctcacatggtgtttgcaatggtagacatgtaaattgaccattgtttcttcctactccacagcatccagcatttgtaacact |
290 |
Q |
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| T |
36361541 |
tgttctcacatggtgtttgcaatggtagacatgtaaattgaccattgtttcttcctactccacagcatccagcatttgtaacact |
36361625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 162 - 290
Target Start/End: Original strand, 3067771 - 3067899
Alignment:
| Q |
162 |
agcttcagttggatgaaaagcatcccaaaacaaatactctcttctgttctcacatggtgtttgcaatggtagacatgtaaattgaccattgtttcttcct |
261 |
Q |
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| T |
3067771 |
agcttcagttgaataaaaagcatcccaaaacaagtactatcttctgttctcacatggtgtttgcattggtagacatataatttgaccatttttccttcct |
3067870 |
T |
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| Q |
262 |
actccacagcatccagcatttgtaacact |
290 |
Q |
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| T |
3067871 |
actccacaacatccaacatttgtaacact |
3067899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 287
Target Start/End: Complemental strand, 7617159 - 7617106
Alignment:
| Q |
234 |
acatgtaaattgaccattgtttcttcctactccacagcatccagcatttgtaac |
287 |
Q |
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| T |
7617159 |
acatgtaatttgaccattgtttcttcctattccacaacacccttcatttgtaac |
7617106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0565 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 287
Target Start/End: Original strand, 3601 - 3814
Alignment:
| Q |
74 |
agagctgagctaagtggctaatatcaataggataagcatcatctggagattgagcactgtaagctctctgagcaacaacaacatttccagcttcagttgg |
173 |
Q |
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|||| ||||||||| | ||||||||||||| |||||||| || |||||||||| |||||||||| | ||| |||| ||||||||||||||||| |
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| T |
3601 |
agagttgagctaagcgattaatatcaatagggtaagcatctgatgcagattgagcattgtaagctcttctaccaataacactgtttccagcttcagttgg |
3700 |
T |
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| Q |
174 |
atgaaaagcatcccaaaacaaatactctcttctgttctcacatggtgtttgcaatggtagacatgtaaattgaccattgtttcttcctactccacagcat |
273 |
Q |
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| T |
3701 |
atgaaatgcatcccaaaataagaacccattcctatccctacatgcaggttgaaagggcaaacatgtaatttgaccattgtttcttcctacaccacagcat |
3800 |
T |
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| Q |
274 |
ccagcatttgtaac |
287 |
Q |
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| T |
3801 |
ccagcatttgtaac |
3814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 290
Target Start/End: Complemental strand, 36648385 - 36648323
Alignment:
| Q |
228 |
tggtagacatgtaaattgaccattgtttcttcctactccacagcatccagcatttgtaacact |
290 |
Q |
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| T |
36648385 |
tggtagacatgtaatttgaccattgttccttcctactccacggcatccaacatttataacact |
36648323 |
T |
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