View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1314_low_90 (Length: 318)
Name: NF1314_low_90
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1314_low_90 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 13 - 289
Target Start/End: Original strand, 35277991 - 35278267
Alignment:
| Q |
13 |
gagagacagaaaagcaagcaaagaaactcttaggactaaaatcagtcaataacagaactcttccatcaatgattgctaagtcatgtttggaaattaaata |
112 |
Q |
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| T |
35277991 |
gagagacagagaagcaagcaaagaaactcttaggactaaaatcagtcaataacacaactcttccatcaatgattgctaagtcatgtttggaaattaaata |
35278090 |
T |
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| Q |
113 |
tagtaacattgagctttatttaagtgaggccagaaacaactcagagatgataaatttgtcttatgggtccatttgtgtatagagacatcttatatcagag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35278091 |
tagtaacattgagctttatttaagtgaggccagaaacaactcagagatgataaatttgtcttatgggtccatttgtttatagagacatcttatatcagag |
35278190 |
T |
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| Q |
213 |
ttaatgtaattagtattactctaatcaaatcaactttgtcatcacaaattatatgctttaaatcaactaatattata |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35278191 |
ttaatgtaattagtattactctaatcaaatcaactttgtcatcacaaattatatgctttaaatcaactaatattata |
35278267 |
T |
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