View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1314_low_96 (Length: 314)

Name: NF1314_low_96
Description: NF1314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1314_low_96
NF1314_low_96
[»] chr8 (9 HSPs)
chr8 (1-242)||(5842939-5843180)
chr8 (1-242)||(5849681-5849922)
chr8 (28-242)||(5887105-5887319)
chr8 (95-242)||(5949036-5949183)
chr8 (95-242)||(5984564-5984711)
chr8 (94-240)||(5960300-5960446)
chr8 (103-242)||(5921152-5921291)
chr8 (188-235)||(41351226-41351273)
chr8 (157-238)||(39916637-39916718)
[»] chr2 (1 HSPs)
chr2 (171-242)||(42788990-42789061)
[»] chr7 (1 HSPs)
chr7 (183-242)||(45676080-45676139)
[»] chr3 (2 HSPs)
chr3 (183-238)||(34626700-34626755)
chr3 (188-238)||(44674039-44674089)
[»] chr5 (2 HSPs)
chr5 (188-238)||(1281333-1281383)
chr5 (188-238)||(1319335-1319385)
[»] chr1 (3 HSPs)
chr1 (188-238)||(16127411-16127461)
chr1 (188-238)||(16138921-16138971)
chr1 (183-235)||(51044474-51044526)
[»] chr4 (1 HSPs)
chr4 (186-238)||(43560551-43560603)


Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 5842939 - 5843180
Alignment:
Q  1 aaagacacttatttgaaaaagaaagatccttttgaactttgagaataataaatggtaatgattgacatgaaaataacattggaggaaaagaagaagagct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5842939 aaagacacttatttgaaaaagaaagatccttttgaactttgagaataataaatggtaatgattgacatgaaaataacattggaggaaaagaagaagagct 5843038  T
Q  101 attgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcataagagaaacttccacgtttcaaatcaggtcttaga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5843039 attgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcataagagaaacttccacgttttaaatcaggtcttaga 5843138  T
Q  201 taatttatccatcttaatctacaactctttccacatctctgc 242  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  5843139 taatttatccatcttaatctacaactttttccacatctctgc 5843180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 5849681 - 5849922
Alignment:
Q  1 aaagacacttatttgaaaaagaaagatccttttgaactttgagaataataaatggtaatgattgacatgaaaataacattggaggaaaagaagaagagct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5849681 aaagacacttatttgaaaaagaaagatccttttgaactttgagaataataaatggtaatgattgacatgaaaataacattggaggaaaagaagaagagca 5849780  T
Q  101 attgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcataagagaaacttccacgtttcaaatcaggtcttaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5849781 attgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcataagagaaacttccacgtttcaaatcaggtcttaga 5849880  T
Q  201 taatttatccatcttaatctacaactctttccacatctctgc 242  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  5849881 taatttatccatcttaatctacaactttttccacatctctgc 5849922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 28 - 242
Target Start/End: Original strand, 5887105 - 5887319
Alignment:
Q  28 ccttttgaactttgagaataataaatggtaatgattgacatgaaaataacattggaggaaaagaagaagagctattgtaatggatatacctattgcctag 127  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||  |||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  5887105 ccttttgaactttgagaataataaattgtaaagattgacatgaaaagcacatcggaggaaaagaaaaagagctattgtaatggatatacctattgcctag 5887204  T
Q  128 aatgctgtgtagttctataatgattgctacttcttcataagagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctacaactc 227  Q
    |||| |||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5887205 aatgttgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctgcaactc 5887304  T
Q  228 tttccacatctctgc 242  Q
    ||||| |||||||||    
T  5887305 tttccgcatctctgc 5887319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 95 - 242
Target Start/End: Original strand, 5949036 - 5949183
Alignment:
Q  95 agagctattgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcataagagaaacttccacgtttcaaatcaggt 194  Q
    ||||||| ||||||| ||||||||||||||||||||| |||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||    
T  5949036 agagctaatgtaatgaatatacctattgcctagaatgttgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatcaggt 5949135  T
Q  195 cttagataatttatccatcttaatctacaactctttccacatctctgc 242  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  5949136 cttagataatttatccatcttaatcttcaactctttccacatctctgc 5949183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 95 - 242
Target Start/End: Original strand, 5984564 - 5984711
Alignment:
Q  95 agagctattgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcataagagaaacttccacgtttcaaatcaggt 194  Q
    ||||||| ||||||| ||||||||||||||||||||| |||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||    
T  5984564 agagctaatgtaatgaatatacctattgcctagaatgttgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatcaggt 5984663  T
Q  195 cttagataatttatccatcttaatctacaactctttccacatctctgc 242  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  5984664 cttagataatttatccatcttaatctgcaactctttccacatctctgc 5984711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 94 - 240
Target Start/End: Original strand, 5960300 - 5960446
Alignment:
Q  94 aagagctattgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcataagagaaacttccacgtttcaaatcagg 193  Q
    |||||||| ||||||| |||||||||||||||| |||| |||| ||||||| ||||| |||||||||||  | |||||||||||||||||||||||||||    
T  5960300 aagagctaatgtaatgaatatacctattgcctaaaatgttgtggagttctacaatgagtgctacttcttgttgagagaaacttccacgtttcaaatcagg 5960399  T
Q  194 tcttagataatttatccatcttaatctacaactctttccacatctct 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  5960400 tcttagataatttatccatcttaatctacaactctttccacatctct 5960446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 103 - 242
Target Start/End: Original strand, 5921152 - 5921291
Alignment:
Q  103 tgtaatggatatacctattgcctagaatgctgtgtagttctataatgattgctacttcttcataagagaaacttccacgtttcaaatcaggtcttagata 202  Q
    ||||||| |||||||||||||||||||||||||| ||||||| ||||| |||  |||||| || ||||||||||||||||||||||||||||||||||||    
T  5921152 tgtaatgaatatacctattgcctagaatgctgtggagttctagaatgagtgcagcttcttgatgagagaaacttccacgtttcaaatcaggtcttagata 5921251  T
Q  203 atttatccatcttaatctacaactctttccacatctctgc 242  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  5921252 atttatccatcttaatctgcaactctttccacatctctgc 5921291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 41351226 - 41351273
Alignment:
Q  188 atcaggtcttagataatttatccatcttaatctacaactctttccaca 235  Q
    ||||||||| | |||||||||||||||||||| ||||||||| |||||    
T  41351226 atcaggtctcaaataatttatccatcttaatcgacaactcttaccaca 41351273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 39916718 - 39916637
Alignment:
Q  157 cttcttcataagagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctacaactctttccacatct 238  Q
    ||||||| | || |||| ||||||| || | ||||||||| |||||||| |||||||| ||||| || || |||||||||||    
T  39916718 cttcttcgtgagtgaaatttccacgcttaagatcaggtctgagataattgatccatctcaatctgcagctttttccacatct 39916637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 42788990 - 42789061
Alignment:
Q  171 aaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctacaactctttccacatctctgc 242  Q
    |||||||||||||||||||||||||||| ||||||||||||||| || || ||||| |||||||||||||||    
T  42788990 aaacttccacgtttcaaatcaggtcttaaataatttatccatctcaacctgcaactttttccacatctctgc 42789061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 45676080 - 45676139
Alignment:
Q  183 ttcaaatcaggtcttagataatttatccatcttaatctacaactctttccacatctctgc 242  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||||    
T  45676080 ttcaaatcaggccttagataatttatccatctcaatctacaactcttcccacacctctgc 45676139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 34626700 - 34626755
Alignment:
Q  183 ttcaaatcaggtcttagataatttatccatcttaatctacaactctttccacatct 238  Q
    |||||||||||||| ||||| || |||||||| |||||||||||||||||||||||    
T  34626700 ttcaaatcaggtctcagatagttgatccatctcaatctacaactctttccacatct 34626755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 44674089 - 44674039
Alignment:
Q  188 atcaggtcttagataatttatccatcttaatctacaactctttccacatct 238  Q
    |||||||||||| |||||||||||||| ||||| |||||||| ||||||||    
T  44674089 atcaggtcttaggtaatttatccatctcaatctgcaactcttgccacatct 44674039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 1281383 - 1281333
Alignment:
Q  188 atcaggtcttagataatttatccatcttaatctacaactctttccacatct 238  Q
    |||||| |||| ||||||| |||||||||| ||||||||||||||||||||    
T  1281383 atcaggacttaaataatttgtccatcttaacctacaactctttccacatct 1281333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 1319335 - 1319385
Alignment:
Q  188 atcaggtcttagataatttatccatcttaatctacaactctttccacatct 238  Q
    |||||| |||||||||||  ||||||| | |||||||||||||||||||||    
T  1319335 atcaggccttagataattattccatctaagtctacaactctttccacatct 1319385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 16127411 - 16127461
Alignment:
Q  188 atcaggtcttagataatttatccatcttaatctacaactctttccacatct 238  Q
    ||||| ||||| |||||| |||||||| |||||||||||||||||||||||    
T  16127411 atcagttcttaaataattaatccatctcaatctacaactctttccacatct 16127461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 16138921 - 16138971
Alignment:
Q  188 atcaggtcttagataatttatccatcttaatctacaactctttccacatct 238  Q
    ||||||| ||| ||| || |||||||| |||||||||||||||||||||||    
T  16138921 atcaggttttaaatagttaatccatctcaatctacaactctttccacatct 16138971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 51044526 - 51044474
Alignment:
Q  183 ttcaaatcaggtcttagataatttatccatcttaatctacaactctttccaca 235  Q
    ||||||||||| || | ||| ||||||||||| |||||||| |||||||||||    
T  51044526 ttcaaatcaggcctcaaatagtttatccatctcaatctacagctctttccaca 51044474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 43560551 - 43560603
Alignment:
Q  186 aaatcaggtcttagataatttatccatcttaatctacaactctttccacatct 238  Q
    |||||||| || | ||| ||||||||||| |||||||||||||||||||||||    
T  43560551 aaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatct 43560603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University