View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1315-Insertion-2 (Length: 457)

Name: NF1315-Insertion-2
Description: NF1315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1315-Insertion-2
NF1315-Insertion-2
[»] chr4 (1 HSPs)
chr4 (10-457)||(34627922-34628371)


Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 10 - 457
Target Start/End: Original strand, 34627922 - 34628371
Alignment:
Q  10 tatatgaataggaaagcagatttctttattataatgtaaaaagacaatatagccnnnnnnnnnn-tccaacaccgtgacaaaagagctaacattatattg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||    
T  34627922 tatatgaataggaaagcagatttctttattataatgtaaaaagacaatatagccaaaaaaaaatatccaacaccgtgacaaaagagctaacattatattg 34628021  T
Q  109 tagaataaattaatctttccatttgttaatatgtctaggtaaaatgacacagaatacgctagacattgttacaggctggtcatgattctatactaaccaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34628022 tagaataaattaatctttccatttgttaatatgtctaggtaaaatgacacagaatacgctagacattgttacaggctggtcatgattctatactaaccaa 34628121  T
Q  209 aatcgtattaacttagctctatagattagaaatagacaaatcccaagttggtattggttaagagttttttcctacatt-aaaatacaaaaatctcacact 307  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34628122 aatcgtattaacttagctctatagattagaaatagataaatcccaagttggtattggttaagagttttttcctacattaaaaatacaaaaatctcacact 34628221  T
Q  308 ataatattaattgtagttttggcagttagcagagtgactgtttcatacaaggactctgcataaagtcaaattgaatctgttttcatgttgtcatatactg 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34628222 ataatattaattgtagttttggcagttagcagagtgactgtttcatacaagggctctgcataaagtcaaattgaatctgttttcatgttgtcatatactg 34628321  T
Q  408 tttggtatattagactctaaaacagccgaaattttgtactttaccttgaa 457  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  34628322 tttggtatattggactctaaaacagccgaatttttgtactttaccttgaa 34628371  T

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