View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13150_high_10 (Length: 433)
Name: NF13150_high_10
Description: NF13150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13150_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 39075746 - 39075338
Alignment:
| Q |
1 |
atcaacaatgtgaagtttcgtctcatcgaatcttccactttagtaaggaacaaattctgcaactcaaatcaaaagctaatgcagaaatccnnnnnnnnnn |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39075746 |
atcaacaatgtgaagttttgtctcatcgaatcttccactttagtaaggaacaaattctgcaactcaaatcaaaagctaatgcagaaatc---agtagtag |
39075650 |
T |
|
| Q |
101 |
nnnnnnnnnngagaaaataataatatcttcactgcaagcgcttttaagtcacgtttggcgtttaattataagtaaacaaaatcttaaaccagaagaaagg |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39075649 |
taatagtagtgagaaaataataatatcttcattgcaagcgcttttaagtcacgtttggcgtttaattataagtaaacaaaatcttaaaccagaagaaagg |
39075550 |
T |
|
| Q |
201 |
tctgctttcgtgttacccatagattgtaggacaagaatgtgtccaaagttagaagagaattattttggaagtggaatcggagcaactgggtatgtaataa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39075549 |
tctgctttcgtgttacccatagattgtaggacaagaatgtgtccaaagttagaagataattattttggaagtggaatcggagcaactggatatgtaataa |
39075450 |
T |
|
| Q |
301 |
tgaaagtaggggaattaatggaaagtgggattggtaaaattgcaatggaaatgaataaggagatttcatcaaaatctcatcatgaaaagttagtgagtaa |
400 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||| || | ||||||||||||| ||| |||||| ||| |
|
|
| T |
39075449 |
tgcaagtaggggaattaatggaaagtgggattggtaaaattgctatggaaatgaacaaggtgatatctatacaatctcatcatgagaaggtagtgaataa |
39075350 |
T |
|
| Q |
401 |
ttatgagtcttg |
412 |
Q |
| |
|
||||||||||| |
|
|
| T |
39075349 |
ctatgagtcttg |
39075338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 123 - 398
Target Start/End: Complemental strand, 7398876 - 7398601
Alignment:
| Q |
123 |
atatcttcactgcaagcgcttttaagtcacgtttggcgtttaattataagtaaacaaaatcttaaaccagaagaaaggtctgctttcgtgttacccatag |
222 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||| ||| ||||||||||||| || |||||||||||||||| |
|
|
| T |
7398876 |
atatcttcattgcaagcgcttttaagtcacctttggcgtttatttataagtaaacaaaatcgtaattcagaagaaaggtcggcattcgtgttacccatag |
7398777 |
T |
|
| Q |
223 |
attgtaggacaagaatgtgtccaaagttagaagagaattattttggaagtggaatcggagcaactgggtatgtaataatgaaagtaggggaattaatgga |
322 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||| | ||||||||||||| ||| | |||||||||| || ||||||| |||||||| |
|
|
| T |
7398776 |
attgtagaacaagaatgtgcccaaagttagaagagaattattttgggaatggaatcggagcagttggatgtgtaataatgcaaataggggagttaatgga |
7398677 |
T |
|
| Q |
323 |
aagtgggattggtaaaattgcaatggaaatgaataaggagatttcatcaaaatctcatcatgaaaagttagtgagt |
398 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| || ||||| |
|
|
| T |
7398676 |
aagtgggattggtaaaattgctatggaaatgaacaaggagatttcatcaaaatctcatcatgagaagataatgagt |
7398601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 7399004 - 7398917
Alignment:
| Q |
1 |
atcaacaatgtgaagtttcgtctcatcgaatcttccactttagtaaggaacaaattctgcaactcaaatcaaaagctaatgcagaaat |
88 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7399004 |
atcaacaatgtgatgtttcgtctaatcgaatcttccactttactaaagaacaaattctgcaactcaaatcaaaagctaatgcagaaat |
7398917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 22 - 412
Target Start/End: Complemental strand, 34174625 - 34174235
Alignment:
| Q |
22 |
ctcatcgaatcttccactttagtaaggaacaaattctgcaactcaaatcaaaagctaatgcagaaatccnnnnnnnnnnnnnnnnnnnngagaaaataat |
121 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
34174625 |
ctcatcgaatcttccacttcacaaaggaacaaattctgcaactcaaatcaaaagctaatgcagaaat---tagtagtagttgcggtggtgataaaataat |
34174529 |
T |
|
| Q |
122 |
aatatcttcactgcaagcgcttttaagtcacgtttggcgtttaattataagtaaacaaaatcttaaaccagaagaaaggtctgctttcgtgttacccata |
221 |
Q |
| |
|
|||||||||| ||||||| |||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||| | |||| |||||| ||| |
|
|
| T |
34174528 |
aatatcttcattgcaagcacttttaagccacttttggcgtttaactataagtaaacaaaatcttaaaccagaagaaaataccattttcaggttaccaata |
34174429 |
T |
|
| Q |
222 |
gattgtaggacaagaatgtgtccaaagttagaagagaattattttggaagtggaatcggagcaactgggtatgtaataatgaaagtaggggaattaat-- |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| | | ||||||| ||| ||||||| ||||||||||||||||| || |
|
|
| T |
34174428 |
gattgtaggacaagaatgtgtccaaagttagcagagaattattttggtaacgcgatcggagtgtatggagatgtaatcatgaaagtaggggaattgatta |
34174329 |
T |
|
| Q |
320 |
-ggaaagtgggattggtaaaattgcaatggaaatgaataaggagatttcatcaaaatctcatcatgaaaagttagtgagtaattatgagtcttg |
412 |
Q |
| |
|
|||| |||| |||||||| ||| ||||||||||| ||| |||||| ||||||||||||| ||| || ||| ||| || |||||||| |
|
|
| T |
34174328 |
aggaaggtggtattggtaaggctgctatggaaatgaacaagatgatttctaaggaatctcatcatgagaaggtaatgaataactacgagtcttg |
34174235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University