View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13150_high_13 (Length: 345)
Name: NF13150_high_13
Description: NF13150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13150_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 16 - 169
Target Start/End: Original strand, 8558473 - 8558626
Alignment:
| Q |
16 |
caaggaacaatattaggtgatttaactgccaagttagcaagctttgagtcactttcaatccaaagattattccaatttctatcaattgcgcattcaactg |
115 |
Q |
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| T |
8558473 |
caaggaacaatattaggtgatttaactgccaagttagcaagctttgagtcactttcaatccaaagattattccaatttctatcaattgcgcattcaactg |
8558572 |
T |
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| Q |
116 |
ccaggatgacacccataagctctgcatagaaagaattagagatgcctaggtttg |
169 |
Q |
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| T |
8558573 |
ccaggatgacacccataagctctgcatagaaagaattagagatgcctaggtttg |
8558626 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 330
Target Start/End: Complemental strand, 8674894 - 8674691
Alignment:
| Q |
127 |
cccataagctctgcatagaaagaattagagatgcctaggtttgcagcaaaacaaccaagactttctccatgattatttctaaaaattcctgcgcaagagg |
226 |
Q |
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| T |
8674894 |
cccatcagctctgcataaaaagaatttgagatgccaaggtttgttgcaaaacaccccagactctccccatgtctattcctgaaaatgcatgcacaagaga |
8674795 |
T |
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| Q |
227 |
attgaccaggggaacctaaagctgaaccatcagtgttgcatttggtccaatgaagaataggagggctccagataacttcaattattttgggggcattagg |
326 |
Q |
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| T |
8674794 |
actagccatggcagcctacaactgagccatcaatgttacatttactccagtgtagaattcgtggactccaaataacttcaatgattctgggagctttagg |
8674695 |
T |
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| Q |
327 |
atga |
330 |
Q |
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|||| |
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| T |
8674694 |
atga |
8674691 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 19103570 - 19103636
Alignment:
| Q |
16 |
caaggaacaatattaggtgatttaactgccaagttagcaagctttgagtcactttcaatccaaagat |
82 |
Q |
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| T |
19103570 |
caaggaactatattaggtggcttgactgccaagttagccaattttgaatcactttcaatccagagat |
19103636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 22821549 - 22821521
Alignment:
| Q |
249 |
tgaaccatcagtgttgcatttggtccaat |
277 |
Q |
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| T |
22821549 |
tgaaccatcagtgttgcatttggtccaat |
22821521 |
T |
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