View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13150_high_4 (Length: 539)

Name: NF13150_high_4
Description: NF13150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13150_high_4
NF13150_high_4
[»] chr1 (16 HSPs)
chr1 (100-406)||(4156577-4156891)
chr1 (61-108)||(4156249-4156296)
chr1 (11-60)||(20762988-20763037)
chr1 (11-60)||(44455480-44455528)
chr1 (321-408)||(4155038-4155123)
chr1 (463-527)||(4155153-4155216)
chr1 (26-62)||(13316149-13316185)
chr1 (11-62)||(1833828-1833878)
chr1 (476-522)||(1462387-1462433)
chr1 (11-44)||(833985-834018)
chr1 (11-44)||(8550599-8550632)
chr1 (11-44)||(28265374-28265407)
chr1 (11-44)||(37503377-37503410)
chr1 (11-44)||(49918670-49918703)
chr1 (435-463)||(1462439-1462467)
chr1 (16-44)||(40122016-40122044)
[»] chr8 (11 HSPs)
chr8 (418-522)||(26789922-26790026)
chr8 (11-60)||(44304175-44304224)
chr8 (11-60)||(19945158-19945207)
chr8 (11-60)||(1746018-1746067)
chr8 (11-60)||(5689587-5689635)
chr8 (11-60)||(17982973-17983021)
chr8 (11-44)||(30143660-30143693)
chr8 (11-60)||(31218577-31218625)
chr8 (11-44)||(41366433-41366466)
chr8 (16-44)||(6599290-6599318)
chr8 (16-44)||(6674743-6674771)
[»] chr7 (5 HSPs)
chr7 (11-60)||(29991373-29991422)
chr7 (11-62)||(35854236-35854287)
chr7 (16-61)||(25616180-25616224)
chr7 (11-44)||(38671040-38671073)
chr7 (11-44)||(41648829-41648862)
[»] chr4 (7 HSPs)
chr4 (11-60)||(5369881-5369930)
chr4 (11-60)||(29999628-29999677)
chr4 (11-60)||(48143368-48143417)
chr4 (11-44)||(47038231-47038264)
chr4 (11-44)||(48893458-48893491)
chr4 (11-44)||(56178451-56178484)
chr4 (16-44)||(45687002-45687030)
[»] chr3 (12 HSPs)
chr3 (16-61)||(9634620-9634665)
chr3 (11-60)||(9635923-9635972)
chr3 (16-60)||(19683687-19683731)
chr3 (11-60)||(5257943-5257992)
chr3 (11-60)||(9581603-9581652)
chr3 (11-44)||(9666285-9666318)
chr3 (11-60)||(40734817-40734865)
chr3 (11-44)||(5236272-5236305)
chr3 (11-60)||(7764785-7764834)
chr3 (11-44)||(22834822-22834855)
chr3 (16-44)||(31314765-31314793)
chr3 (16-44)||(44700299-44700327)
[»] scaffold0002 (1 HSPs)
scaffold0002 (11-60)||(434854-434903)
[»] chr6 (11 HSPs)
chr6 (11-60)||(16452127-16452176)
chr6 (11-60)||(2171326-2171375)
chr6 (11-60)||(5406002-5406051)
chr6 (11-60)||(5408869-5408918)
chr6 (11-60)||(5410327-5410376)
chr6 (11-60)||(5413194-5413243)
chr6 (11-60)||(22963508-22963557)
chr6 (11-60)||(23824836-23824885)
chr6 (17-60)||(28137211-28137253)
chr6 (11-61)||(30834332-30834382)
chr6 (11-44)||(26954106-26954139)
[»] chr5 (5 HSPs)
chr5 (11-60)||(30182908-30182957)
chr5 (11-60)||(9789021-9789070)
chr5 (11-60)||(25413080-25413129)
chr5 (23-62)||(18441439-18441478)
chr5 (11-44)||(5887250-5887283)
[»] chr2 (13 HSPs)
chr2 (11-60)||(36205464-36205513)
chr2 (11-62)||(2334216-2334266)
chr2 (23-62)||(32289900-32289939)
chr2 (11-44)||(723562-723595)
chr2 (19-60)||(4502933-4502973)
chr2 (11-60)||(5723056-5723104)
chr2 (11-44)||(6594819-6594852)
chr2 (11-44)||(14633643-14633676)
chr2 (11-44)||(24885905-24885938)
chr2 (11-44)||(34139588-34139621)
chr2 (11-60)||(36773878-36773926)
chr2 (11-44)||(36987890-36987923)
chr2 (11-44)||(42362665-42362698)
[»] scaffold1519 (1 HSPs)
scaffold1519 (11-60)||(1236-1285)
[»] scaffold0286 (1 HSPs)
scaffold0286 (11-60)||(11886-11935)


Alignment Details
Target: chr1 (Bit Score: 129; Significance: 2e-66; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 100 - 406
Target Start/End: Original strand, 4156577 - 4156891
Alignment:
Q  100 taatttcattcttgtgatttgtttatgttagtactgactttatgtgaaaaatgtgaataacaggaagtgtaattgtgtaactgtagactagtccatctat 199  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |    
T  4156577 taatttcattcttgtgatttgtttatgttagtgttgactttatgtgaaaaatgtgaataacaggaagtgtaattgtgtaactgtagaccggtccatcttt 4156676  T
Q  200 tgaa-------------aattcatttagtataaattaagtgattagactcaagtggttactcagttaatgatgaattttatagaagatctagagtctgaa 286  Q
    | ||             |||||||||||||||||||||||||||  |||||           |||||||||||||| |||||||||||||||||||| ||    
T  4156677 taaaaattcatttgtcgaattcatttagtataaattaagtgattgaactca-----------agttaatgatgaatcttatagaagatctagagtctcaa 4156765  T
Q  287 tcgtggttggaata------nnnnnnnngtatagactattaatttttgtttgccatgagtcaaacattgaatcccattttatttgaactttaaattgatg 380  Q
     |||||||||||||              ||||||||| |||||||||||||| ||||||||||||||||||||| |||| || |||||||||||||||||    
T  4156766 ccgtggttggaatatttttttgtcatatgtatagactcttaatttttgtttggcatgagtcaaacattgaatcctatttcatctgaactttaaattgatg 4156865  T
Q  381 cgaacattagagattagaaaaagttt 406  Q
    ||||||||||||| ||||||||||||    
T  4156866 cgaacattagagactagaaaaagttt 4156891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 4156296 - 4156249
Alignment:
Q  61 gtcattaatgatatgattcttatatcccattttttatgttaatttcat 108  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  4156296 gtcattaatgatatgattcttaaatcccattttttatgttaatttcat 4156249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 20762988 - 20763037
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  20762988 cacacatcatagtttgtattggtgtgattttgagaccggaattcacaaca 20763037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 44455480 - 44455528
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||| ||||||||||||||||||||||||||||| || ||||||||||||    
T  44455480 cacatatcatagtttgtattggtgtgattttgagtac-gaattcacaaca 44455528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 408
Target Start/End: Original strand, 4155038 - 4155123
Alignment:
Q  321 aatttttgtttgccatgagtcaaacattgaatcccattttatttgaactttaaattgatgcgaacattagagattagaaaaagtttta 408  Q
    ||||||||||||||||||||| |  ||  |||||||||| || |||||||||||||||||  ||||| ||||||| || ||| |||||    
T  4155038 aatttttgtttgccatgagtcgagtat--aatcccatttcatgtgaactttaaattgatgtcaacatcagagattggacaaattttta 4155123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 463 - 527
Target Start/End: Original strand, 4155153 - 4155216
Alignment:
Q  463 ttaagtgataacgttgatttttggttttgacagggaatttattaaaaggatggagcaatttgtga 527  Q
    ||||||| |||| |||||||||||||||||||| |||  || |||||||||||||||||| ||||    
T  4155153 ttaagtgttaacattgatttttggttttgacagagaa-ctactaaaaggatggagcaattcgtga 4155216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 13316185 - 13316149
Alignment:
Q  26 gtattggtgtgattttgagaacggaattcacaacagt 62  Q
    |||||||||||||||||||| ||||||||||||||||    
T  13316185 gtattggtgtgattttgagaccggaattcacaacagt 13316149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 1833828 - 1833878
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaacagt 62  Q
    |||||||||||||||||||||||||||| |||||  | ||||||||||||||    
T  1833828 cacagatcatagtttgtattggtgtgatattgag-tccgaattcacaacagt 1833878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 476 - 522
Target Start/End: Complemental strand, 1462433 - 1462387
Alignment:
Q  476 ttgatttttggttttgacagggaatttattaaaaggatggagcaatt 522  Q
    ||||||||||||||||||||||||| |||  || |||||||||||||    
T  1462433 ttgatttttggttttgacagggaatctatctaagggatggagcaatt 1462387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 834018 - 833985
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgag 44  Q
    |||| |||||||||||||||||||||||||||||    
T  834018 cacacatcatagtttgtattggtgtgattttgag 833985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 8550632 - 8550599
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgag 44  Q
    |||| |||||||||||||||||||||||||||||    
T  8550632 cacacatcatagtttgtattggtgtgattttgag 8550599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 28265407 - 28265374
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgag 44  Q
    |||| |||||||||||||||||||||||||||||    
T  28265407 cacacatcatagtttgtattggtgtgattttgag 28265374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 37503410 - 37503377
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgag 44  Q
    |||| |||||||||||||||||||||||||||||    
T  37503410 cacacatcatagtttgtattggtgtgattttgag 37503377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 49918670 - 49918703
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgag 44  Q
    |||| |||||||||||||||||||||||||||||    
T  49918670 cacacatcatagtttgtattggtgtgattttgag 49918703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 435 - 463
Target Start/End: Complemental strand, 1462467 - 1462439
Alignment:
Q  435 ttaaatatgataaatatataaatgattgt 463  Q
    |||||||||||||||||||||||||||||    
T  1462467 ttaaatatgataaatatataaatgattgt 1462439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 40122044 - 40122016
Alignment:
Q  16 atcatagtttgtattggtgtgattttgag 44  Q
    |||||||||||||||||||||||||||||    
T  40122044 atcatagtttgtattggtgtgattttgag 40122016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 418 - 522
Target Start/End: Complemental strand, 26790026 - 26789922
Alignment:
Q  418 tcaattctttcaaataattaaatatgataaatatataaatgattgttaagtgataacgttgatttttggttttgacagggaatttattaaaaggatggag 517  Q
    |||| |||||||| |||||||||| |||||||||||||||||  |||||||  |||||| ||||||||||||||||||| ||  ||||||||||||||||    
T  26790026 tcaactctttcaactaattaaatacgataaatatataaatgacagttaagttgtaacgtcgatttttggttttgacaggaaacctattaaaaggatggag 26789927  T
Q  518 caatt 522  Q
    |||||    
T  26789926 caatt 26789922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 44304175 - 44304224
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  44304175 cacacatcatagtatgtattggtgtgattttgagaacggaattcacaaca 44304224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 19945207 - 19945158
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||| |||| ||||||||||||||||||||||||| ||||||||||||||    
T  19945207 cacacatcaaagtttgtattggtgtgattttgagaccggaattcacaaca 19945158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 1746067 - 1746018
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||| ||||||||| |||||||||||||||||||| || |||||||||||    
T  1746067 cacacatcatagttcgtattggtgtgattttgagaccgaaattcacaaca 1746018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 5689587 - 5689635
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||| |||||||||||||||||||||||||||||  ||||||||||||||    
T  5689587 cacacatcatagtttgtattggtgtgattttgag-tcggaattcacaaca 5689635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 17982973 - 17983021
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||| |||||||||||||||||||||| ||||||| ||||||||||||||    
T  17982973 cacacatcatagtttgtattggtgtga-tttgagatcggaattcacaaca 17983021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 30143660 - 30143693
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgag 44  Q
    |||| |||||||||||||||||||||||||||||    
T  30143660 cacacatcatagtttgtattggtgtgattttgag 30143693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 31218577 - 31218625
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||| |||||||||| ||||||||||| ||||||| ||||||||||||||    
T  31218577 cacacatcatagtttatattggtgtga-tttgagaccggaattcacaaca 31218625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 41366466 - 41366433
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgag 44  Q
    |||| |||||||||||||||||||||||||||||    
T  41366466 cacacatcatagtttgtattggtgtgattttgag 41366433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 6599290 - 6599318
Alignment:
Q  16 atcatagtttgtattggtgtgattttgag 44  Q
    |||||||||||||||||||||||||||||    
T  6599290 atcatagtttgtattggtgtgattttgag 6599318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 6674743 - 6674771
Alignment:
Q  16 atcatagtttgtattggtgtgattttgag 44  Q
    |||||||||||||||||||||||||||||    
T  6674743 atcatagtttgtattggtgtgattttgag 6674771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 29991373 - 29991422
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  29991373 cacacatcatagtttgtattggtgtgactttgagaacggaattcacaaca 29991422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 35854236 - 35854287
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaacagt 62  Q
    |||| ||||||||||||||| ||||||||||||||  |||||||||||||||    
T  35854236 cacacatcatagtttgtatttgtgtgattttgagactggaattcacaacagt 35854287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 25616180 - 25616224
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagaacggaattcacaacag 61  Q
    ||||||||||||||||||||||||||||| || | |||||||||||    
T  25616180 atcatagtttgtattggtgtgattttgagtac-gtattcacaacag 25616224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 38671073 - 38671040
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgag 44  Q
    |||| |||||||||||||||||||||||||||||    
T  38671073 cacacatcatagtttgtattggtgtgattttgag 38671040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 41648862 - 41648829
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgag 44  Q
    |||| |||||||||||||||||||||||||||||    
T  41648862 cacacatcatagtttgtattggtgtgattttgag 41648829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 5369930 - 5369881
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  5369930 cacacatcatagtttgtattggtgtgattttgagaccggaattcacaaca 5369881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 29999677 - 29999628
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  29999677 cacacatcatagtttgtattggtgtgattttgagaccggaattcacaaca 29999628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 48143368 - 48143417
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||| |||||||||||||||||||||||||||||  ||||||||||||||    
T  48143368 cacacatcatagtttgtattggtgtgattttgagtccggaattcacaaca 48143417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 47038264 - 47038231
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgag 44  Q
    |||| |||||||||||||||||||||||||||||    
T  47038264 cacacatcatagtttgtattggtgtgattttgag 47038231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 48893491 - 48893458
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgag 44  Q
    |||| |||||||||||||||||||||||||||||    
T  48893491 cacacatcatagtttgtattggtgtgattttgag 48893458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 56178484 - 56178451
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgag 44  Q
    |||| |||||||||||||||||||||||||||||    
T  56178484 cacacatcatagtttgtattggtgtgattttgag 56178451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 45687030 - 45687002
Alignment:
Q  16 atcatagtttgtattggtgtgattttgag 44  Q
    |||||||||||||||||||||||||||||    
T  45687030 atcatagtttgtattggtgtgattttgag 45687002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 9634665 - 9634620
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagaacggaattcacaacag 61  Q
    |||||||||||||||||||||||||||||| |||||||||||||||    
T  9634665 atcatagtttgtattggtgtgattttgagaccggaattcacaacag 9634620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 9635972 - 9635923
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  9635972 cacacatcatagtttgtattggtgtgattttgagaccggaattcacaaca 9635923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 19683731 - 19683687
Alignment:
Q  16 atcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||    
T  19683731 atcatagtttgtattggtgtgagtttgagaccggaattcacaaca 19683687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 5257992 - 5257943
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||| ||||||||| |||||||||||| ||||||| ||||||||||||||    
T  5257992 cacacatcatagttcgtattggtgtgactttgagaccggaattcacaaca 5257943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 9581603 - 9581652
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||| |||||||||| ||||||||||||||||||  ||||||||||||||    
T  9581603 cacacatcatagtttatattggtgtgattttgagtccggaattcacaaca 9581652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 9666318 - 9666285
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgag 44  Q
    ||||||||||||||||||||||||||||||||||    
T  9666318 cacagatcatagtttgtattggtgtgattttgag 9666285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 40734817 - 40734865
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||| ||||||||||||||||||||||||||||| || ||||||||||||    
T  40734817 cacacatcatagtttgtattggtgtgattttgag-accgaattcacaaca 40734865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 5236305 - 5236272
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgag 44  Q
    |||| |||||||||||||||||||||||||||||    
T  5236305 cacacatcatagtttgtattggtgtgattttgag 5236272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 7764785 - 7764834
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||| ||||||||||||||||||||  |||||||  ||||||||||||||    
T  7764785 cacacatcatagtttgtattggtgtagttttgagtccggaattcacaaca 7764834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 22834855 - 22834822
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgag 44  Q
    |||| |||||||||||||||||||||||||||||    
T  22834855 cacacatcatagtttgtattggtgtgattttgag 22834822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 31314765 - 31314793
Alignment:
Q  16 atcatagtttgtattggtgtgattttgag 44  Q
    |||||||||||||||||||||||||||||    
T  31314765 atcatagtttgtattggtgtgattttgag 31314793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 44700327 - 44700299
Alignment:
Q  16 atcatagtttgtattggtgtgattttgag 44  Q
    |||||||||||||||||||||||||||||    
T  44700327 atcatagtttgtattggtgtgattttgag 44700299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 434854 - 434903
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||| ||||||||| |||||||||||| ||||||||||||||||||||||    
T  434854 cacacatcatagttcgtattggtgtgactttgagaacggaattcacaaca 434903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 16452176 - 16452127
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||| ||||||||| |||||||||||||||||||| ||||||||||||||    
T  16452176 cacacatcatagttcgtattggtgtgattttgagatcggaattcacaaca 16452127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 2171375 - 2171326
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||| ||||||||| |||||||||||| ||||||| ||||||||||||||    
T  2171375 cacacatcatagttcgtattggtgtgactttgagaccggaattcacaaca 2171326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 5406051 - 5406002
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||| |||||||||||||||||||||| ||| ||| ||||||||||||||    
T  5406051 cacacatcatagtttgtattggtgtgactttaagaccggaattcacaaca 5406002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 5408918 - 5408869
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||| |||||||||||||||||||||| |||||||  |||||||||||||    
T  5408918 cacacatcatagtttgtattggtgtgactttgagactggaattcacaaca 5408869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 5410376 - 5410327
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||| |||||||||||||||||||||| ||| ||| ||||||||||||||    
T  5410376 cacacatcatagtttgtattggtgtgactttaagaccggaattcacaaca 5410327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 5413243 - 5413194
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||| |||||||||||||||||||||| |||||||  |||||||||||||    
T  5413243 cacacatcatagtttgtattggtgtgactttgagactggaattcacaaca 5413194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 22963557 - 22963508
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||| |||||||||||||||||||||||||||||   |||||||||||||    
T  22963557 cacacatcatagtttgtattggtgtgattttgagtctggaattcacaaca 22963508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 23824836 - 23824885
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||| |||||||||||||||||||||||||||||   |||||||||||||    
T  23824836 cacacatcatagtttgtattggtgtgattttgagtctggaattcacaaca 23824885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 28137253 - 28137211
Alignment:
Q  17 tcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||||||||||||||||||||||||||| || ||||||||||||    
T  28137253 tcatagtttgtattggtgtgattttgag-accgaattcacaaca 28137211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 30834382 - 30834332
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaacag 61  Q
    |||| |||||| || |||||||||||||||||||| || ||||||||||||    
T  30834382 cacacatcatatttcgtattggtgtgattttgagaccgaaattcacaacag 30834332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 26954139 - 26954106
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgag 44  Q
    |||| |||||||||||||||||||||||||||||    
T  26954139 cacacatcatagtttgtattggtgtgattttgag 26954106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 30182908 - 30182957
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||| |||||||||||| ||||||||||||||||| ||||||||||||||    
T  30182908 cacacatcatagtttgttttggtgtgattttgagaccggaattcacaaca 30182957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 9789070 - 9789021
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||| |||||| |||||||||||||| |||||||| ||||||||||||||    
T  9789070 cacacatcatactttgtattggtgtggttttgagatcggaattcacaaca 9789021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 25413080 - 25413129
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||| ||||||||| |||||||||||||||||| | ||||||||||||||    
T  25413080 cacacatcatagttcgtattggtgtgattttgaaaccggaattcacaaca 25413129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 18441478 - 18441439
Alignment:
Q  23 tttgtattggtgtgattttgagaacggaattcacaacagt 62  Q
    |||||||||||||| |||||||| ||||||||||||||||    
T  18441478 tttgtattggtgtggttttgagatcggaattcacaacagt 18441439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 5887283 - 5887250
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgag 44  Q
    |||| |||||||||||||||||||||||||||||    
T  5887283 cacatatcatagtttgtattggtgtgattttgag 5887250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 36205513 - 36205464
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||| ||||||||||||||| |||||||||||||| ||||||||||||||    
T  36205513 cacacatcatagtttgtattagtgtgattttgagaccggaattcacaaca 36205464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 2334266 - 2334216
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaacagt 62  Q
    |||| |||||||||||||||||||||||||||||  | ||||||||||||||    
T  2334266 cacacatcatagtttgtattggtgtgattttgag-tctgaattcacaacagt 2334216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 32289900 - 32289939
Alignment:
Q  23 tttgtattggtgtgattttgagaacggaattcacaacagt 62  Q
    |||||||||||||| |||||||| ||||||||||||||||    
T  32289900 tttgtattggtgtggttttgagatcggaattcacaacagt 32289939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 723595 - 723562
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgag 44  Q
    |||| |||||||||||||||||||||||||||||    
T  723595 cacacatcatagtttgtattggtgtgattttgag 723562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 4502973 - 4502933
Alignment:
Q  19 atagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    ||||||||||||||||||| ||||||| ||||||||||||||    
T  4502973 atagtttgtattggtgtga-tttgagaccggaattcacaaca 4502933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 5723104 - 5723056
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||| ||||||||||||||||||||||||||  | |||||||||||||||    
T  5723104 cacacatcatagtttgtattggtgtgatttt-tgtacggaattcacaaca 5723056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 6594852 - 6594819
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgag 44  Q
    |||| |||||||||||||||||||||||||||||    
T  6594852 cacacatcatagtttgtattggtgtgattttgag 6594819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 14633676 - 14633643
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgag 44  Q
    |||| |||||||||||||||||||||||||||||    
T  14633676 cacacatcatagtttgtattggtgtgattttgag 14633643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 24885905 - 24885938
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgag 44  Q
    |||| |||||||||||||||||||||||||||||    
T  24885905 cacacatcatagtttgtattggtgtgattttgag 24885938  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 34139621 - 34139588
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgag 44  Q
    |||| |||||||||||||||||||||||||||||    
T  34139621 cacacatcatagtttgtattggtgtgattttgag 34139588  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 36773878 - 36773926
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||| |||||||||||||||||||||||||||| | | ||||||||||||    
T  36773878 cacacatcatagtttgtattggtgtgattttga-atccgaattcacaaca 36773926  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 36987923 - 36987890
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgag 44  Q
    |||| |||||||||||||||||||||||||||||    
T  36987923 cacacatcatagtttgtattggtgtgattttgag 36987890  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 42362665 - 42362698
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgag 44  Q
    |||| |||||||||||||||||||||||||||||    
T  42362665 cacacatcatagtttgtattggtgtgattttgag 42362698  T

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Target: scaffold1519 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold1519
Description:

Target: scaffold1519; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 1236 - 1285
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||| ||||||||| |||||||||||| ||||||| ||||||||||||||    
T  1236 cacacatcatagttcgtattggtgtgactttgagaccggaattcacaaca 1285  T

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Target: scaffold0286 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 11886 - 11935
Alignment:
Q  11 cacagatcatagtttgtattggtgtgattttgagaacggaattcacaaca 60  Q
    |||| ||||||||| |||||||||||| ||||||| ||||||||||||||    
T  11886 cacacatcatagttcgtattggtgtgactttgagaccggaattcacaaca 11935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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