View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13150_high_9 (Length: 464)
Name: NF13150_high_9
Description: NF13150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13150_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 2895000 - 2895446
Alignment:
| Q |
1 |
ctcactttcctccgccaccgtccgattcagaatcacttctcgacgagaaagctagaaaatggaagaaactgaactcaaatcgttactgcgatagtcgaca |
100 |
Q |
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| T |
2895000 |
ctcactttcctccgccaccgtccgattcagaatcacttctcgacgagagagctagaaaatggaagaaactgaactcaaatcgttactgcgatagtcgaaa |
2895099 |
T |
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| Q |
101 |
gttagggttcatcgaatctcagaaagaactcatgccaccggaacacgttcgaaaaatcatccgcgatcacggtgatatgtcatcaacgaaattccgtcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2895100 |
gttagggttcatcgaatctcagaaagaactcatgccaccggaacacgttcgaaaaatcatccgcgatcacggtgatatgtcatcaacgaaattccgtcac |
2895199 |
T |
|
| Q |
201 |
gataagcgagtttatctcggagccctgaaattcgtaccgcatgctatttataagcttctggaaaatatgccaatgccatgggagcaagttcgagatgtta |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2895200 |
gataagcgagtttatctcggagcactgaaattcgtaccgcatgctatttataagcttctggaaaatatgccaatgccatgggagcaagttcgagatgtta |
2895299 |
T |
|
| Q |
301 |
aagttctgtatcatgtttctggtgctattacatttgtgaatgaaattccgcttgttattgaaccaatttacatcgctcaatggagtacaatgtggattat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2895300 |
aagttctgtatcatgtttctggtgctattacatttgtgaatgaaattccgcttgttattgaaccaatttacatcgctcaatggagtacaatgtggattat |
2895399 |
T |
|
| Q |
401 |
gatgcggagagagaagcgtgatcgacgatgttttaagaggatgaggt |
447 |
Q |
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| T |
2895400 |
gatgcggagagagaagcgtgatcgacgatgttttaagaggatgaggt |
2895446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 165 - 298
Target Start/End: Complemental strand, 44785970 - 44785837
Alignment:
| Q |
165 |
gatcacggtgatatgtcatcaacgaaattccgtcacgataagcgagtttatctcggagccctgaaattcgtaccgcatgctatttataagcttctggaaa |
264 |
Q |
| |
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||||| || |||||||| || | |||||| |||||||| ||||| || ||||| ||||| ||||| || |||| |||||| |||||||||| ||||||| |
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| T |
44785970 |
gatcatggcgatatgtcctctaagaaatttcgtcacgacaagcgtgtgtatcttggagcactgaagtttataccacatgctgtttataagctcctggaaa |
44785871 |
T |
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| Q |
265 |
atatgccaatgccatgggagcaagttcgagatgt |
298 |
Q |
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| T |
44785870 |
atatgcctatgccttgggagcaggttcgagatgt |
44785837 |
T |
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