View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13150_low_11 (Length: 424)
Name: NF13150_low_11
Description: NF13150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13150_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 38 - 421
Target Start/End: Original strand, 16368074 - 16368458
Alignment:
| Q |
38 |
ctaagtggtattgggcctagttagatgctttgtaagcccacttacaaagttgtataagtatacatttgaaatgatgactgaaagtatagtgaacttaatt |
137 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
16368074 |
ctaagtggtattgggcctagttaggtgctttgtaagcccatttacaaagttgtataagtatacatt-gaaatgatgactgaaagtatagcgaacttaa-- |
16368170 |
T |
|
| Q |
138 |
atgtgacaatacaataactacnnnnnnnnn---agcaaaaataat---ttcttattactatactatgtagtgtctatcaattaaactcatagtttatgga |
231 |
Q |
| |
|
||||||||||||||| | | |||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
16368171 |
--gtgacaatacaataagttctcttttttttggagcaaaaatagtaagttcttattactatactatgtagtgtatatcaattaaactcatagtttatgga |
16368268 |
T |
|
| Q |
232 |
ataaaatgctaattaaattgtttatcaaattcagaattgagagagtacctgttctagtaacacattaagatttccctttgaaacatggtgtgtctcacca |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16368269 |
ataaaatgctaattaaattgtttatcaaattcaaaattgagagagtacctgttctagtaacacattaagatttccctttgaaacatggtgtgtctcacca |
16368368 |
T |
|
| Q |
332 |
agaatagggttataaggagcaacaccaaatgatataggacgtgtggtagatatggaccatgctacaacagatatgaacctatccaatgga |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16368369 |
agaatagggttataaggagcaacaccaaatgatataggacgtgtggtagatatggaccatgctacaacagatatgaacctatccaatgga |
16368458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 276 - 402
Target Start/End: Original strand, 16356742 - 16356868
Alignment:
| Q |
276 |
gtacctgttctagtaacacattaagatttccctttgaaacatggtgtgtctcaccaagaatagggttataaggagcaacaccaaatgatataggacgtgt |
375 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||| || || || |||||||| || |||||||||||||||||||| | ||| | ||| |
|
|
| T |
16356742 |
gtacctgttctagtaggacattaagatttcccttggaaacatgatgagtttctccaagaattggattataaggagcaacaccaaaaagtggaggtcttgt |
16356841 |
T |
|
| Q |
376 |
ggtagatatggaccatgctacaacaga |
402 |
Q |
| |
|
||| |||||| ||||||||||||||| |
|
|
| T |
16356842 |
ggttgatatgctccatgctacaacaga |
16356868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 296 - 421
Target Start/End: Complemental strand, 52931468 - 52931343
Alignment:
| Q |
296 |
ttaagatttccctttgaaacatggtgtgtctcaccaagaatagggttataaggagcaacaccaaatgatataggacgtgtggtagatatggaccatgcta |
395 |
Q |
| |
|
||||| || ||||| |||||||||||||||||||||||||| || |||||||||||||| ||||| ||| |||| ||||||||||||||| ||| |||| |
|
|
| T |
52931468 |
ttaaggttgcccttggaaacatggtgtgtctcaccaagaatgggattataaggagcaactccaaaagatgtagggcgtgtggtagatatgctccaagcta |
52931369 |
T |
|
| Q |
396 |
caacagatatgaacctatccaatgga |
421 |
Q |
| |
|
| |||||| ||||||| ||||||||| |
|
|
| T |
52931368 |
ccacagatgtgaacctttccaatgga |
52931343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 40369775 - 40369723
Alignment:
| Q |
45 |
gtattgggcctagttagatgctttgtaagcccacttacaaagttgtataagtat |
98 |
Q |
| |
|
||||||| |||||| ||||| || ||||||||| |||||||||||||||||||| |
|
|
| T |
40369775 |
gtattggacctagtgagatgatt-gtaagcccatttacaaagttgtataagtat |
40369723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University